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Commit f29fa7fc authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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Update runme.sh

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......@@ -35,3 +35,8 @@ conda activate snakemake
snakemake --use-envmodules -n
#run the pipeline
sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock
#re-run the pipeline at specific step
sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock --forcerun multiqc
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