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Commit 355d3ac2 authored by Hervé  MENAGER's avatar Hervé MENAGER
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Update README.md

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# iPPI-DB project repository
# ippidb-web
Refactoring and update of iPPIDB database
### Description of the repository:
- **ansible**
- ansible recipes to deploy ippidb web site automatically
- **ichem_module**
- module for IChem private tool.
INFO: to use IChem on TARS:
`#module load /pasteur/projets/policy01/IPPI-DB/sources/iPPIDB/ichem_module/5.2.8`
- **ippidb_backend**
- java codes a bit optimized and refactored by Hélenes Borges (a full refactoring is not mandatory but needed (can be done later)
(brainstorming and documentation available at https://docs.google.com/presentation/d/1-HZZiRmEtipNkKLxKpmAhNHmuBbsjCQ7jmcTdgmf88g/edit?usp=sharing)
- **ippidb_binaries**
- binaries used for the ippidb website backend calculations
- the galaxy subdirectory contains Galaxy XML for galaxy-dev.web.pasteur.fr instance
- the lib_lib subdirectory contains the jar dependancies for the Java Chemaxon based program (sources are in ippidb_backend dir)
- **ippidb_files**
- files mandatory for the binaries execution:
- the Chemaxon licenses (update here and with the same name of the license is updated in 2018)
- **ippidb_module**
- module for Chemaxon based private tools.
INFO: to use Chemaxon tools on TARS:
`#module load /pasteur/projets/policy01/IPPI-DB/sources/iPPIDB/ippidb_module/0.1`
- **ippidb_targetbased_binaries**
- python scripts for the tarbased based ippidb approach
- galaxy directory with the XMLs for the python scripts + gromacs protonation tools + IChem Volsite XML (not fonctional yet)
- **ippisite** (HM, and RT don't hesitate to fill this description)
- django web interface for ippidb
- front-end web interface
This repository contains the django web application that manages the iPPI-DB
database.
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