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Commit da0501a0 authored by Fabien MAREUIL's avatar Fabien MAREUIL
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typo

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1 merge request!29Prepare for v1.1.0
Pipeline #47755 passed
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Stage: deploy
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ippisite/ippidb/static/js/targetcentrict_networks.js
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...@@ -31,7 +31,7 @@ var node_trace = function(nodes, edges) { ...@@ -31,7 +31,7 @@ var node_trace = function(nodes, edges) {
trace_PL = { trace_PL = {
x: x_PL, x: x_PL,
y: y_PL, y: y_PL,
name: ' Protein/Ligand complexes', name: 'Protein/Ligand complexes',
text: text_PL, text: text_PL,
mode: 'markers', mode: 'markers',
type: 'scattergl', type: 'scattergl',
......
ippisite/ippidb/templates/targetcentric.html
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...@@ -54,7 +54,7 @@ ...@@ -54,7 +54,7 @@
<div class="card-body"> <div class="card-body">
<form id="searchform" autocomplete="off" action="{% url 'cavities' %}" method="get"> <form id="searchform" autocomplete="off" action="{% url 'cavities' %}" method="get">
<div class="input-group autocomplete"> <div class="input-group autocomplete">
<input id="id_search" name="search" class="form-control" type="text" placeholder="Search by PDB ID, Protein name, Uniprot ID, ligands, organism" aria-label="Search"> <input id="id_search" name="search" class="form-control" type="text" placeholder="Search by PDB ID, Protein name, Uniprot ID, ligand ID, organism" aria-label="Search">
<div class="input-group-append"> <div class="input-group-append">
<button data-toggle="modal" data-target="#waitingmodal" type="submit" class="btn btn-outline-secondary"><i class="fas fa-search"></i></button> <button data-toggle="modal" data-target="#waitingmodal" type="submit" class="btn btn-outline-secondary"><i class="fas fa-search"></i></button>
</div> </div>
...@@ -158,8 +158,8 @@ ...@@ -158,8 +158,8 @@
</div> </div>
<div class="row text-justify ml-3 mr-3"> <div class="row text-justify ml-3 mr-3">
<div class="col-8 text-wrap"> <div class="col-8 text-wrap">
Gradient colors for table is based on maximum and minimum score in the matrix. The color gradient for the table is based on maximum and minimum PSI (Pocket Similarity Index) in the matrix.
Score is given when you mouseover a cavity name. PSI is given when you mouseover a cavity name.
</div> </div>
<div class="col-4"> <div class="col-4">
<table class="gradiant"><tbody><tr> <table class="gradiant"><tbody><tr>
...@@ -224,8 +224,8 @@ ...@@ -224,8 +224,8 @@
{{ cavity.chain.pdb_chain_id }} / {{ cavity.chain.protein.short_name }} {{ cavity.chain.pdb_chain_id }} / {{ cavity.chain.protein.short_name }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ cavity.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ cavity.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ cavity.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ cavity.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% if cavity.partner.ligand %} {% if cavity.partner.ligand %}
...@@ -235,8 +235,8 @@ ...@@ -235,8 +235,8 @@
{{ cavity.partner.ligand.pdb_ligand_id }}_{{ cavity.partner.ligand.supplementary_id }} {{ cavity.partner.ligand.pdb_ligand_id }}_{{ cavity.partner.ligand.supplementary_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ cavity.partner.ligand.pdb_ligand_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ cavity.partner.ligand.pdb_ligand_id }}">Query ligand ID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ cavity.partner.ligand.canonical_smile|urlencode }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ cavity.partner.ligand.canonical_smile|urlencode }}">Query SMILES in iPPI-DB compounds</a>
</div> </div>
</span> </span>
{% else %} {% else %}
...@@ -246,8 +246,8 @@ ...@@ -246,8 +246,8 @@
{{ cavity.partner.chain.pdb_chain_id }} {{ cavity.partner.chain.pdb_chain_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ cavity.partner.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ cavity.partner.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ cavity.partner.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ cavity.partner.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% endif %} {% endif %}
...@@ -291,8 +291,8 @@ ...@@ -291,8 +291,8 @@
{{ distance.cavity2.chain.pdb_chain_id }} / {{ distance.cavity2.chain.protein.short_name }} {{ distance.cavity2.chain.pdb_chain_id }} / {{ distance.cavity2.chain.protein.short_name }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity2.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity2.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity2.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity2.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% if distance.cavity2.partner.ligand %} {% if distance.cavity2.partner.ligand %}
...@@ -302,8 +302,8 @@ ...@@ -302,8 +302,8 @@
{{ distance.cavity2.partner.ligand.pdb_ligand_id }}_{{ distance.cavity2.partner.ligand.supplementary_id }} {{ distance.cavity2.partner.ligand.pdb_ligand_id }}_{{ distance.cavity2.partner.ligand.supplementary_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ distance.cavity2.partner.ligand.pdb_ligand_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ distance.cavity2.partner.ligand.pdb_ligand_id }}">Query ligand ID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ distance.cavity2.partner.ligand.canonical_smile|urlencode }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ distance.cavity2.partner.ligand.canonical_smile|urlencode }}">Query SMILES in iPPI-DB compounds</a>
</div> </div>
</span> </span>
{% else %} {% else %}
...@@ -313,8 +313,8 @@ ...@@ -313,8 +313,8 @@
{{ distance.cavity2.partner.chain.pdb_chain_id }} {{ distance.cavity2.partner.chain.pdb_chain_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity2.partner.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity2.partner.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity2.partner.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity2.partner.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% endif %} {% endif %}
...@@ -356,8 +356,8 @@ ...@@ -356,8 +356,8 @@
{{ distance.cavity1.chain.pdb_chain_id }} / {{ distance.cavity1.chain.protein.short_name }} {{ distance.cavity1.chain.pdb_chain_id }} / {{ distance.cavity1.chain.protein.short_name }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity1.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity1.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprot_id={{ distance.cavity1.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprot_id={{ distance.cavity1.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% if distance.cavity1.partner.ligand %} {% if distance.cavity1.partner.ligand %}
...@@ -367,8 +367,8 @@ ...@@ -367,8 +367,8 @@
{{ distance.cavity1.partner.ligand.pdb_ligand_id }}_{{ distance.cavity1.partner.ligand.supplementary_id }} {{ distance.cavity1.partner.ligand.pdb_ligand_id }}_{{ distance.cavity1.partner.ligand.supplementary_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ distance.cavity1.partner.ligand.pdb_ligand_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?ligandcode={{ distance.cavity1.partner.ligand.pdb_ligand_id }}">Query ligand ID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ distance.cavity1.partner.ligand.canonical_smile|urlencode }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?similar_to=ECFP4:{{ distance.cavity1.partner.ligand.canonical_smile|urlencode }}">Query SMILES in iPPI-DB compounds</a>
</div> </div>
</span> </span>
{% else %} {% else %}
...@@ -378,8 +378,8 @@ ...@@ -378,8 +378,8 @@
{{ distance.cavity1.partner.chain.pdb_chain_id }} {{ distance.cavity1.partner.chain.pdb_chain_id }}
</button> </button>
<div class="dropdown-content"> <div class="dropdown-content">
<a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity1.partner.chain.protein.uniprot_id }}">search on cavities</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'cavities' %}?uniprotid={{ distance.cavity1.partner.chain.protein.uniprot_id }}">Query UniprotID in cavities</a>
<a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity1.partner.chain.protein.uniprot_id }}">search on compounds</a> <a target="_blank" rel="noopener noreferrer" href="{% url 'compound_list' %}?uniprot_id={{ distance.cavity1.partner.chain.protein.uniprot_id }}">Query UniprotID as iPPI-DB target</a>
</div> </div>
</span> </span>
{% endif %} {% endif %}
......
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