Commits · 5ca15143b156668efb537ffd059e4fb65ce6139e · iPPIDB / ippidb-web

Aug 22, 2018

add compound smiles to the biplots in the DB · e9c16014

Hervé MENAGER authored 6 years ago

this is to be used to display compound structures in biplots
for #78


Former-commit-id: fa228c05ef260891812bb6af526bf54a60f8e9a3

e9c16014

Aug 21, 2018

fix compound bibliography reference for IDs 1651, 1652, 1653, 1654 · 643ae133

Hervé MENAGER authored 6 years ago

this is to fix #82
the bug comes from a badly formatted compound name in the source DB,
where the separator is a dot instead of a dash.


Former-commit-id: 0969974b841fce0204de4678b31a93cda141af52

643ae133

Jul 29, 2018
- denormalize ppi name to improve compound query performance · 85b91008
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: efe273eac847d110d0b8791fa2eb89191d212ffa
```
  85b91008
Jul 27, 2018
- Ppi fields pdb_id and family can be blank · e8419a04
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a334477697b35ef6e5ca68ecff70604d49a59c9f
```
  e8419a04
- CompoundActivityResult inhibition_percentage can be blank · ab60d00a
  Hervé MENAGER authored 6 years ago
```
sqlite db modified


Former-commit-id: 5c12ac45f86f8e3865adbd9892e7c757372417ea
```
  ab60d00a
- journal name can be blank in Bibliography patent entries · ff7ac9b5
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 266ba132a332918bcc37d816da1c5776acff2833
```
  ff7ac9b5
- corrections to model for MDDRCompoundImport · 0600bfcd
  Hervé MENAGER authored 6 years ago
```
- name is now a text field
- add "Phase 0" and "Suspended" for development phases


Former-commit-id: f8b3e83ba413335a74f85c216078246180176eb6
```
  0600bfcd
- convert canonical_smiles from CharField(500) to TextField · caba9899
  Hervé MENAGER authored 6 years ago
```
to think these could only be 500 chars long was a pipe dream...


Former-commit-id: a7b7445303b98f64de0edff49e623b9ba01fff9a
```
  caba9899
Jul 25, 2018
- define biplot json as TextField to avoid max_length pg problems · b2dfb590
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: d0a059132b70a76919992b0c8aafbe2e5cd3ffd5
```
  b2dfb590
- migrate version of the database to change cmax into c_max · 99c8d0f5
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: be774d59e639c817a67ebfb187fd28f53f91e6a6
```
  99c8d0f5
Jul 19, 2018
- regenerate compound-biblio ref links in the DB · 4935bcb8
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 77e1d0531c29aae8b8409f8cd9950ca70a3d6059
```
  4935bcb8
Jun 13, 2018
- update DB to include back patent data and depending data · 90ca8468
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: d7b91c565e463a0acb7e68a5002c55ba71ef555b
```
  90ca8468
May 18, 2018
- add back bibliography-compound links · 93261f8c
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 346a1ef2b00b85257b53e1abbd555edca5020123
```
  93261f8c
- recompute LE-LLE and PCA biplots on the data · c9f17a57
  Hervé MENAGER authored 6 years ago
```
closes #63


Former-commit-id: 73261eea928e083bb2f91f1d1c80b34ea50b9b14
```
  c9f17a57
May 15, 2018
- cleanup PPI families in the initial DB · 32100a09
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: 0744e9a5f04750804a7d3eab0417a85405f1f1e5
```
  32100a09
May 03, 2018

add PCA chart to compound card, WIP · 8d877cab

Hervé MENAGER authored 6 years ago

this work is an implementation of #49, and includes code written
by @plaville.


Former-commit-id: 76daaabbc5c17f5e26f9c203c7ef54f6197d3386

8d877cab

May 02, 2018
- finish adding PPI families to the vignette and LE/LLE plot · 11b2efc0
  Hervé MENAGER authored 6 years ago
```
(closes #55)


Former-commit-id: 4bf4c7d44a0961955e7a196bdad6c4d18f862582
```
  11b2efc0
- update "base DB" from last PPI family migration correction (#55) · f655abd1
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: c3fbd95196b8276b31260aa22a65bb55bdb04c04
```
  f655abd1
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
```
  4cebe0c4
Apr 08, 2018
- filter LE-LLE biplot data for only pXC50 activity results · eebeef8d
  Hervé MENAGER authored 6 years ago
```
and try to take into account if no data for this activity


Former-commit-id: 62ae7b8832a9bd9e372ff59c43a6ef2dfcaa329f
```
  eebeef8d
- add "compound target family" to the LE-LLE plot · ca80e1ec
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: a8980972bc9fdf6728a1b910230b59734d4311ff
```
  ca80e1ec
- precompute and store the LE-LLE biplot data in the database · 3e2b9dd3
  Hervé MENAGER authored 6 years ago
```
precompute with python manage lle_le


Former-commit-id: c831ad2782e66bdbf4127ee870d5748b89a67abe
```
  3e2b9dd3
Mar 26, 2018
- keep previous IDs for compounds (close #51) · ec5e5231
  Hervé MENAGER authored 6 years ago
```
Former-commit-id: dc7d75f5db848b8eab3228c01c4fe51c0a5e986c
```
  ec5e5231
Feb 12, 2018
- minor display correct for display switch in compounds query · 44f34a26
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 6f2920cc0be9f1dccafcad84014890ee6735bfe5
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  44f34a26
Jan 31, 2018
- add ORCID identification option · 741d7d48
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 0a5e122fc7d88980eed59879c3d7f129642e3050
```
  741d7d48
- add first social authentication system (github) · cb7d01ac
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 68d5cd12f8261618a02032b14b5e67c91f6b1291
```
  cb7d01ac
Dec 19, 2017
- re-add db.sqlite3 file · d7b27646
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 5ca82abe330b830c93bf3e963986d0582b5db2d1
```
  d7b27646
Dec 13, 2017
- Update db · ff8a39bc
  Rachel TORCHET authored 7 years ago
```
Former-commit-id: 3e523340012c98df84f3844846af9f5ba324e7a7
```
  ff8a39bc
Nov 13, 2017
- compound name in publication is not prefixed anymore with biblio ID · c4992035
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 0b97bbabb8660f34c41d68b6ed31402e89bc70bc
```
  c4992035
Nov 10, 2017
- modifications to CompoundAction, DB schema and contents update · 12dc1385
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: fd8882c1de38153af4ae187304fa6acc5538f23b
```
  12dc1385
Nov 07, 2017
- database updated with short names · 1f45bfda
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 7150402f672fe37aa61ea596385cc1fc7e9c8c27
```
  1f45bfda
Oct 18, 2017
- corrections on initial migrated data · b2c2598a
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 0cd6f2af0e63820e78e802cd656d9945bbde246f
```
  b2c2598a
Jul 11, 2017
- save objects in Wizard steps to escape storage hell. · fa14d5d8
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 7f39a04b19e82c358a9cf5d3bb7a1f3aeacf22b3
```
  fa14d5d8
- experiment in trying to save Model objects as json for the wizard · 9d86faa8
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: b2181d605c00bb890226f2c4213d22f2498aa534
```
  9d86faa8
May 23, 2017
- update db contents · 5aa7e4cd
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 204a88ef02f2d0fb1fc3efbc905c4ea94ae90707
```
  5aa7e4cd
- migrate TestActivityDescription and CellLine · 1b6dcfbd
  Hervé MENAGER authored 7 years ago
```
- CellLine is an optional field in TestActivityDescription
- fixes #12, fixes #27


Former-commit-id: 0d2cf5154164153b3047befd87a46a1b6885b60c
```
  1b6dcfbd
- administration modes are an enumerated type, not a external table. · 84a8469a
  Hervé MENAGER authored 7 years ago
```
indirectly fixes #10


Former-commit-id: 752a49eea7d413544f8ad74478924847edb1c959
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  84a8469a
- add mysql convertor to avoid "bytearray" strings from mysql driver · 004f4690
  Hervé MENAGER authored 7 years ago
```
Former-commit-id: 64c85ed8155a7034a145bc99b364c1f68a623def
```
  004f4690
- add imported MDDR and define MDDR activity classes as an enum type · 8efe9f64
  Hervé MENAGER authored 7 years ago
```
closes #40


Former-commit-id: 7d5595a4c6209b146a27f09a8151d6734b9d9660
```
  8efe9f64