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Commit 940d3f58 authored by Bryan BRANCOTTE's avatar Bryan BRANCOTTE
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indicate how to run jass with only test data, plus link to how to generate...

indicate how to run jass with only test data, plus link to how to generate data from docker-compose run section
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...@@ -84,6 +84,8 @@ The init table generation is performed using JASS with the previously-mentionned ...@@ -84,6 +84,8 @@ The init table generation is performed using JASS with the previously-mentionned
# import GWAS data into JASS # import GWAS data into JASS
jass create-inittable --input-data-path "GWAS/*.txt" --init-covariance-path "COV.txt" --regions-map-path "regions.txt" --description-file-path "description.txt" --init-table-path "inittable.hdf5" jass create-inittable --input-data-path "GWAS/*.txt" --init-covariance-path "COV.txt" --regions-map-path "regions.txt" --description-file-path "description.txt" --init-table-path "inittable.hdf5"
.. _Create initTable:
How to generate input data for JASS How to generate input data for JASS
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...@@ -113,7 +113,7 @@ If using docker-compose is not an option, you need to launch two servers in two ...@@ -113,7 +113,7 @@ If using docker-compose is not an option, you need to launch two servers in two
Launching with docker compose (recommended) Launching with docker compose (recommended)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Once docker and docker-compose installed, just run Once docker and docker-compose installed, copy the :ref:`initTable.hdf5 you created <Create initTable>` in data/ folder and then run
.. code-block:: shell .. code-block:: shell
...@@ -123,6 +123,15 @@ Once docker and docker-compose installed, just run ...@@ -123,6 +123,15 @@ Once docker and docker-compose installed, just run
docker-compose up docker-compose up
# then visit http://0.0.0.0:3000/ # then visit http://0.0.0.0:3000/
If you just want to try jass with test data (i.e without creating an initTable), run:
.. code-block:: shell
# build the application
docker-compose build
# launch the whole application with
docker-compose -f docker-compose.yaml -f docker-compose.test.yaml up
# then visit http://0.0.0.0:3000/
launching the two servers on Linux launching the two servers on Linux
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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