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Commit b13fe091 authored by Hanna JULIENNE's avatar Hanna JULIENNE
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Fixed beta_or_Z column name

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jass_preprocessing/compute_score.py
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...@@ -30,7 +30,7 @@ def compute_z_score(mgwas): ...@@ -30,7 +30,7 @@ def compute_z_score(mgwas):
mgwas.loc[mgwas["computed_z"].isin([np.inf]), 'computed_z'] = mgwas["z"] mgwas.loc[mgwas["computed_z"].isin([np.inf]), 'computed_z'] = mgwas["z"]
elif 'beta' in mgwas.columns: elif 'beta_or_Z' in mgwas.columns:
sign_vect = np.sign(mgwas.beta) sign_vect = np.sign(mgwas.beta)
mgwas["computed_z"] = mgwas["computed_z"].replace(np.inf, 37.537836095576054) mgwas["computed_z"] = mgwas["computed_z"].replace(np.inf, 37.537836095576054)
else: else:
......
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