Draft: Resolve "Draft a template and requirement checklist for how to write and review a defense system"

Proposition of

• a template to create wiki pages
• a guide to review wiki pages

TEMPLATE.md

REVIEWER_GUIDE.md

changed milestone to %fixed before hackaton

added DefenseSystem documentation enhancement labels

assigned to @jcury

assigned to @ftesson and unassigned @jcury

assigned to @jcury and unassigned @ftesson

requested review from @ftesson

requested review from @hgeorjon and removed review request for @ftesson

In REVIEWER_GUIDES.md : In the frontmatter, need to add the contributors field:

title: tableColumns: article: doi: abstract: Sensor: Activator: Effector: PFAM: contributors: - Author

In TEMPLATE.md : For experimental validatio: Using mermaid for the representation I don't know exactly how to explain. Basically everything is link by arrow:

A --> B where A and B are the node ID For each experimtal validation you have to add:

graph LR;
Source --> Origin
Origin --> Expressed
Expressed --> Phage

    subgraph Title1[Reference]
        Source 
end
    subgraph Title2[System origin]
        Origin
end
    subgraph Title3[Expression species]
        Expressed
end
    subgraph Title4[Phage infected]
        Phage
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none

Example from Tiamat:

graph LR;
    Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_0
    Origin_0[Bacillus cereus 
<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2641244160'>2641244160</a>] --> Expressed_0[Escherichia coli]
    Expressed_0[Escherichia coli] ----> T6 & T5
    subgraph Title1[Reference]
        Millman_2022
end
    subgraph Title2[System origin]
        Origin_0
end
    subgraph Title3[Expression species]
        Expressed_0
end
    subgraph Title4[Phage infected]
        T6
        T5
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none

closed