abio_hackaton

merge request related to issue #212 (closed)

content/3.defense-systems/abio.md

@@ -10,9 +10,22 @@ tableColumns:
     Activator: Unknown
     Effector: Unknown
     PFAM: PF01443, PF09848
+relevantAbstracts:
+  - doi: 10.1023/A:1002027321171
+  - doi: 10.1016/j.mib.2005.06.006
+  - doi: 10.3168/jds.S0022-0302(98)75713-3
 ---
 
 # AbiO
+
+## Description
+AbiO is a single gene defense system discovered in 1998 :ref{10.3168/jds.S0022-0302(98)75713-3}. It one of the so-called "Abi" systems discovered in the 90's mostly in link to the dairy industry :ref{10.1016/j.mib.2005.06.006}.
+This system is only composed of one single gene containing a helicase domain.
+
+## Molecular mechanism
+
+As far as we are aware, the molecular mechanism is unknown.
+
 ## Example of genomic structure
 
 The AbiO system is composed of one protein: AbiO.
@@ -49,7 +62,7 @@ dataUrl: /abio/AbiO__AbiO-plddts_87.43501.pdb
 graph LR;
     Chopin_2005[<a href='https://doi.org/10.1016/j.mib.2005.06.006'>Chopin et al., 2005</a>] --> Origin_0
     Origin_0[lactococcal plasmid  
-<a href='https://ncbi.nlm.nih.gov/protein/insideplasmid:I61427.1'>insideplasmid:I61427.1</a>] --> Expressed_0[lactococci]
+<a href='https://ncbi.nlm.nih.gov/protein/I61427.1'>In the plasmid : I61427.1</a>] --> Expressed_0[lactococci]
     Expressed_0[lactococci] ----> 936 & c2
     subgraph Title1[Reference]
         Chopin_2005
@@ -69,14 +82,6 @@ end
     style Title3 fill:none,stroke:none,stroke-width:none
     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
 
-::relevant-abstracts
----
-items:
-    - doi: 10.1023/A:1002027321171
-    - doi: 10.1016/j.mib.2005.06.006
 
----
-::