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Commit 57236bc8 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion :recycle:
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Merge branch '20-install-metaphlan3' into 'master'

add documentation for metaphlan3 install

Closes #20

See merge request !4
parents e5353381 a52ebf03
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1 merge request!4add documentation for metaphlan3 install
# Metaphlan3 and StrainPhlan3
## Install
> You need to perform install from the head of submission (tars-0) since an internet connection is needed
[Instructions here](https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#installation), in brief what has been done:
```bash
conda create --name mpa -c bioconda python=3.7 metaphlan
conda activate mpa # or source activate mpa
metaphlan --install # install db
```
## Run
You can try the following tutorials:
* [Metaphlan3](https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#basic-usage)
* [StrainPhlan3](https://github.com/biobakery/MetaPhlAn/wiki/StrainPhlAn-3.0#usage)
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