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Metagenomics
docs
Commits
57236bc8
Commit
57236bc8
authored
4 years ago
by
Kenzo-Hugo Hillion
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Merge branch '20-install-metaphlan3' into 'master'
add documentation for metaphlan3 install Closes
#20
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add documentation for metaphlan3 install
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# Metaphlan3 and StrainPhlan3
## Install
> You need to perform install from the head of submission (tars-0) since an internet connection is needed
[
Instructions here
](
https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#installation
)
, in brief what has been done:
```
bash
conda create
--name
mpa
-c
bioconda
python
=
3.7 metaphlan
conda activate mpa
# or source activate mpa
metaphlan
--install
# install db
```
## Run
You can try the following tutorials:
*
[
Metaphlan3
](
https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#basic-usage
)
*
[
StrainPhlan3
](
https://github.com/biobakery/MetaPhlAn/wiki/StrainPhlAn-3.0#usage
)
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