Commit 0462c446 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

Start README for workflow

parent a959cec8
......@@ -10,4 +10,4 @@ samples:
- test_00002
cat:
name_merge: all.emapper.seed_orthologs
name_merge: all.emapper.seed_orthologs
# EggNOG mapper v2
This describes a workflow to run [eggnog mapper on a large dataset](https://github.com/eggnogdb/eggnog-mapper/wiki/eggNOG-mapper-v2#setting-up-large-annotation-jobs)
In brief it contains 4 steps:
* Splitting the input FASTA files into chunks
* Run diamond from eggnogmapper on each chunks
* Merge all results to one unique `emapper.seed_orthologs`
* Perform annotations from this unique file
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