change miss-cleavage to miscleavage

tests/test_digest.py

@@ -20,7 +20,7 @@ def test_resultonedigestion():
 
     # Test function '__repr__()'
     res_dig0 = digest.ResultOneDigestion(enz_name, peptides, nb_cleav, pos_mc)
-    assert res_dig0.__repr__() == "Number of cleavage: 1\nNumber of miss-clea"\
+    assert res_dig0.__repr__() == "Number of cleavage: 1\nNumber of misclea"\
                                   "vage: 2\nPositions of miscleavage: [2, 3"\
                                   "]\nRatio of miscleavage: 66.666666666666"\
                                   "66\nPeptides: [Original header: Test\nNo. "\
@@ -113,7 +113,7 @@ def test_resultonedigestion():
 
     # Test function 'get_more_info()'
     assert res_dig5.get_more_info() == "\nNumber of cleavage: 5\nCleavage pos"\
-                                       "ition: 3, 4, 3\nNumber of miss-cleava"\
+                                       "ition: 3, 4, 3\nNumber of miscleava"\
                                        "ge: 6\nmiscleavage position: 2, 3, "\
                                        "4, 6, 2, 3\nmiscleavage ratio: "\
                                        "54.55%\nSmallest peptide size: 8\nN t"\
@@ -344,7 +344,7 @@ def test_digest_from_input(capsys, tmpdir):
     # Test input data
     seq = "WQSDESDFZQSDESDF"
     res = digest.digest_from_input(seq, enzymes, mode)
-    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\
+    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\
                                    "avage: 0\nPositions of miscleavage: []"\
                                    "\nRatio of miscleavage: 0.0\nPeptides: "\
                                    "[Original header: Input\nNo. peptide: 0"\
@@ -370,7 +370,7 @@ def test_digest_from_input(capsys, tmpdir):
     fasta_file = tmpdir.join("test.fasta")
     fasta_file.write(">Fake1\nWQSDESDFZQS\nDESDF\n>Fake2\nNPHARDORCOMPLET")
     res = digest.digest_from_input(str(fasta_file), enzymes, mode)
-    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\
+    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\
                                    "avage: 0\nPositions of miscleavage: []"\
                                    "\nRatio of miscleavage: 0.0\nPeptides: "\
                                    "[Original header: Fake1\nNo. peptide: 0\n"\
@@ -391,7 +391,7 @@ def test_digest_from_input(capsys, tmpdir):
                                    "ide: 4\nEnzyme: fake_enzyme1\nCleav. pos:"\
                                    " 16\nPep. size: 1\nPep. mass: 165.19188\n"\
                                    "Pep. pI: 5.54\nSequence: F\n]\n"
-    assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miss-cle"\
+    assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miscle"\
                                    "avage: 0\nPositions of miscleavage: []"\
                                    "\nRatio of miscleavage: 0\nPeptides: [O"\
                                    "riginal header: Fake2\nNo. peptide: 0\nEn"\
@@ -404,7 +404,7 @@ def test_digest_from_input(capsys, tmpdir):
     fastq_file.write("@Fake1\nWQSDESDFZQSDESDF\n+Fake1\nnWQSDESDFZQSDESDF\n@Fa"\
                      "ke2\nNPHARDORCOMPLET\n+Fake2\nnNPHARDORCOMPLET\n")
     res = digest.digest_from_input(str(fastq_file), enzymes, mode)
-    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\
+    assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\
                                    "avage: 0\nPositions of miscleavage: []"\
                                    "\nRatio of miscleavage: 0.0\nPeptides: "\
                                    "[Original header: Fake1\nNo. peptide: 0\n"\
@@ -425,7 +425,7 @@ def test_digest_from_input(capsys, tmpdir):
                                    "ide: 4\nEnzyme: fake_enzyme1\nCleav. pos:"\
                                    " 16\nPep. size: 1\nPep. mass: 165.19188\n"\
                                    "Pep. pI: 5.54\nSequence: F\n]\n"
-    assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miss-cle"\
+    assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miscle"\
                                    "avage: 0\nPositions of miscleavage: []"\
                                    "\nRatio of miscleavage: 0\nPeptides: [O"\
                                    "riginal header: Fake2\nNo. peptide: 0\nEn"\