Commit 40938218 authored by Nicolas  MAILLET's avatar Nicolas MAILLET
Browse files

Fix for python3.5 compatibility

parent 2652afef
Pipeline #47178 failed with stages
in 10 seconds
......@@ -227,7 +227,7 @@ def next_read(file, offset_start, offset_end):
# Open the file, GZIP or not
with (gzip.open(file, "rb") if magic == b"\x1f\x8b"
else open(file, "rb")) as in_file:
else open(str(file), "rb")) as in_file:
first_line = in_file.readline().decode('utf-8')
# FASTQ file
if first_line.startswith("@"):
......
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