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Commit 445bf5bf authored by Nicolas  MAILLET's avatar Nicolas MAILLET
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PEP8

parent 6fd891b3
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......@@ -132,7 +132,8 @@ def test_output_results(capsys, tmpdir):
fmt = "csv"
quiet = True
verbose = 0
core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose)
core.output_results(str(output_file), all_seq_digested, fmt, quiet,
verbose)
out, err = capsys.readouterr()
# Quiet
assert out == ""
......@@ -152,7 +153,8 @@ def test_output_results(capsys, tmpdir):
fmt = "csv"
quiet = False
verbose = 3
core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose)
core.output_results(str(output_file), all_seq_digested, fmt, quiet,
verbose)
out, err = capsys.readouterr()
assert output_file.read() == "Original_header,No_peptide,Enzyme,Cleaving_"\
"pos,Peptide_size,Peptide_mass,pI,Sequence\n"\
......@@ -201,8 +203,8 @@ def test_peptide():
format_res = pep0.__format__("csv")
assert format_res == "Test,1,fake_enzyme,3,8,1012.98488,3.29,QWSDESDF"
format_res = pep2.__format__("tsv")
assert format_res == "Test\t1\tfake_enzyme\t2\t8\t1012.98488\t3.29\tQWSDES"\
"DF"
assert format_res == "Test\t1\tfake_enzyme\t2\t8\t1012.98488\t3.29\tQWSD"\
"ESDF"
format_res = pep3.__format__("fasta")
assert format_res == ">Test_2_fake_enzyme_3_8_1012.98488_3.29\nQWSDESDF"
......
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