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Nicolas MAILLET
rpg
Commits
fe9f66f4
There was a problem fetching the pipeline summary.
Commit
fe9f66f4
authored
7 years ago
by
Nicolas MAILLET
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Correcting failing test
parent
445bf5bf
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Pipeline
#
Changes
2
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2 changed files
rpg/enzyme.py
+0
-1
0 additions, 1 deletion
rpg/enzyme.py
tests/test_enzyme.py
+6
-10
6 additions, 10 deletions
tests/test_enzyme.py
with
6 additions
and
11 deletions
rpg/enzyme.py
+
0
−
1
View file @
fe9f66f4
...
@@ -78,7 +78,6 @@ class Enzyme:
...
@@ -78,7 +78,6 @@ class Enzyme:
:param enz_file: location of user file (default: ~/rpg_user.py)
:param enz_file: location of user file (default: ~/rpg_user.py)
:type enz_file: str
:type enz_file: str
"""
"""
#print(self)
if
self
.
rules
!=
[]:
if
self
.
rules
!=
[]:
# Comment and first line of the Enzyme
# Comment and first line of the Enzyme
ret
=
"
\n\n\n
# User defined enzyme
"
+
self
.
name
+
"
\n
ENZ = []
\n\n
"
ret
=
"
\n\n\n
# User defined enzyme
"
+
self
.
name
+
"
\n
ENZ = []
\n\n
"
...
...
This diff is collapsed.
Click to expand it.
tests/test_enzyme.py
+
6
−
10
View file @
fe9f66f4
...
@@ -42,25 +42,21 @@ def test_enzyme(tmpdir):
...
@@ -42,25 +42,21 @@ def test_enzyme(tmpdir):
"""
Test function
"""
Test function
'
write_enzyme_in_user_file(self, enz_file=DEFUSERENZFILE)
'
'
write_enzyme_in_user_file(self, enz_file=DEFUSERENZFILE)
'
"""
"""
'''
output_file
=
tmpdir
.
join
(
"
test_enzuser.py
"
)
fil = tmpdir.join(
"
test.tmp
"
)
dict_rule
=
{}
dict_rule
=
{}
rule_txt
=
"
(D)(E,)
"
rule_txt
=
"
(D)(E,)
"
dict_rule[rule_txt] =
Fals
e
dict_rule
[
rule_txt
]
=
Tru
e
all_rules
=
rule
.
create_rules
(
dict_rule
)
all_rules
=
rule
.
create_rules
(
dict_rule
)
new_enz
=
enzyme
.
Enzyme
(
-
1
,
"
fake_enzyme
"
,
all_rules
)
new_enz
=
enzyme
.
Enzyme
(
-
1
,
"
fake_enzyme
"
,
all_rules
)
new_enz.write_enzyme_in_user_file(fil)
new_enz
.
write_enzyme_in_user_file
(
str
(
output_file
))
# ICI BUG
assert
output_file
.
read
()
==
'
\n\n\n
# User defined enzyme fake_enzyme
\n
ENZ = []
\n
'
\
'
\n
E_1 = rule.Rule(0,
"
E
"
, False, 1) # Never cut
'
\
assert fil.read() ==
'
\n\n\n
# User defined enzyme fake_enzyme
\n
ENZ = []
\n
'
\
'
\n
E_1 = rule.Rule(0,
"
E
"
, True, 1) # Always cut
'
\
'
after E, except...
\n
D_E_1M1 = rule.Rule(-1,
"
D
"
,
'
\
'
after E, except...
\n
D_E_1M1 = rule.Rule(-1,
"
D
"
,
'
\
'
Fals
e, -1) #
Never
cut after E, preceded by D,
'
\
'
Tru
e, -1) #
Always
cut after E, preceded by D,
'
\
'
except...
\n
E_1.rules.append(D_E_1M1)
\n
ENZ.append(
'
\
'
except...
\n
E_1.rules.append(D_E_1M1)
\n
ENZ.append(
'
\
'
E_1)
\n\n
ENZYME = enzyme.Enzyme(CPT_ENZ,
"
fake_enzym
'
\
'
E_1)
\n\n
ENZYME = enzyme.Enzyme(CPT_ENZ,
"
fake_enzym
'
\
'
e
"
, ENZ, 0)
\n
# Add it to available enzymes
\n
AVAILAB
'
\
'
e
"
, ENZ, 0)
\n
# Add it to available enzymes
\n
AVAILAB
'
\
'
LE_ENZYMES_USER.append(ENZYME)
\n
CPT_ENZ += 1
\n
'
'
LE_ENZYMES_USER.append(ENZYME)
\n
CPT_ENZ += 1
\n
'
'''
def
test_check_enzyme_name
():
def
test_check_enzyme_name
():
"""
Test function
'
check_enzyme_name(name_new_enz, all_name_enz)
'
.
"""
"""
Test function
'
check_enzyme_name(name_new_enz, all_name_enz)
'
.
"""
...
...
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