Merge branch 'dev' into 'main'

bugfix for direct call to new_write_larva_dataset_hdf5

See merge request !4

Project.toml

 name = "TaggingBackends"
 uuid = "e551f703-3b82-4335-b341-d497b48d519b"
 authors = ["François Laurent", "Institut Pasteur"]
-version = "0.15"
+version = "0.15.1"
 
 [deps]
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"

pyproject.toml

 [tool.poetry]
 name = "TaggingBackends"
-version = "0.15"
+version = "0.15.1"
 description = "Backbone for LarvaTagger.jl tagging backends"
 authors = ["François Laurent"]
 

src/LarvaDatasets.jl

@@ -540,7 +540,7 @@ Known issue: ASCII-compatible string attributes are ASCII encoded and deserializ
 by the *h5py* Python library.
 """
 function write_larva_dataset_hdf5(output_dir::String,
-        input_data::Union{String, <:AbstractVector},
+        input_data::Union{Repository, String, <:AbstractVector},
         window_length::Int=20;
         labels::Union{Nothing, <:AbstractVector{String}}=nothing,
         labelpointers::Union{Nothing, <:AbstractDict{String, Vector{Tuple{Int, Int, Int}}}}=nothing,
@@ -619,7 +619,7 @@ function new_write_larva_dataset_hdf5(output_dir, input_data;
     @assert !isnothing(frameinterval)
     window = TimeWindow(window_length * frameinterval, round(Int, 1 / frameinterval);
                         maggotuba_compatibility=past_future_extensions)
-    index = if startswith(balancing_strategy, "max:")
+    index = if !isnothing(balancing_strategy) && startswith(balancing_strategy, "max:")
         # `includeall` not supported
         maxcount = parse(Int, balancing_strategy[5:end])
         capacitysampling(labels, maxcount; seed=seed)