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Commit cb160e34 authored by François  LAURENT's avatar François LAURENT
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version increment

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Pipeline #102594 passed
name = "LarvaTagger" name = "LarvaTagger"
uuid = "8b3b36f1-dfed-446e-8561-ea19fe966a4d" uuid = "8b3b36f1-dfed-446e-8561-ea19fe966a4d"
authors = ["François Laurent", "Institut Pasteur"] authors = ["François Laurent", "Institut Pasteur"]
version = "0.14" version = "0.14.1"
[deps] [deps]
Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
......
...@@ -25,8 +25,8 @@ LarvaTagger.jl ...@@ -25,8 +25,8 @@ LarvaTagger.jl
Usage: Usage:
larvatagger.jl open <file-path> [--backends=<path>] [--port=<number>] [--quiet] [--viewer] [--browser] [--manual-label=<label>] larvatagger.jl open <file-path> [--backends=<path>] [--port=<number>] [--quiet] [--viewer] [--browser] [--manual-label=<label>]
larvatagger.jl import <input-path> [<output-file>] [--id=<id>] [--framerate=<fps>] [--pixelsize=<μm>] [--overrides=<comma-separated-list>] [--default-label=<label>] [--manual-label=<label>] [--decode] larvatagger.jl import <input-path> [<output-file>] [--id=<id>] [--framerate=<fps>] [--pixelsize=<μm>] [--overrides=<comma-separated-list>] [--default-label=<label>] [--manual-label=<label>] [--decode]
larvatagger.jl train <backend-path> <data-path> <model-instance> [--pretrained-model=<instance>] [--labels=<comma-separated-list>] [--sample-size=<N>] [--balancing-strategy=<strategy>] [--class-weights=<csv>] [--manual-label=<label>] [--layers=<N>] [--iterations=<N>] larvatagger.jl train <backend-path> <data-path> <model-instance> [--pretrained-model=<instance>] [--labels=<comma-separated-list>] [--sample-size=<N>] [--balancing-strategy=<strategy>] [--class-weights=<csv>] [--manual-label=<label>] [--layers=<N>] [--iterations=<N>] [--seed=<seed>]
larvatagger.jl predict <backend-path> <model-instance> <data-path> [--make-dataset] [--skip-make-dataset] [--data-isolation] larvatagger.jl predict <backend-path> <model-instance> <data-path> [--output=<filename>] [--make-dataset] [--skip-make-dataset] [--data-isolation]
larvatagger.jl merge <input-path> <input-file> [<output-file>] [--manual-label=<label>] [--decode] larvatagger.jl merge <input-path> <input-file> [<output-file>] [--manual-label=<label>] [--decode]
larvatagger.jl -V | --version larvatagger.jl -V | --version
larvatagger.jl -h | --help larvatagger.jl -h | --help
...@@ -48,6 +48,7 @@ Options: ...@@ -48,6 +48,7 @@ Options:
--sample-size=<N> Sample only N track segments from the data repository. --sample-size=<N> Sample only N track segments from the data repository.
--layers=<N> (MaggotUBA) Number of layers of the classifier. --layers=<N> (MaggotUBA) Number of layers of the classifier.
--iterations=<N> (MaggotUBA) Number of training iterations (can be two integers separated by a comma). --iterations=<N> (MaggotUBA) Number of training iterations (can be two integers separated by a comma).
--seed=<seed> Seed for the backend's random number generators.
--decode Do not encode the labels into integer indices. --decode Do not encode the labels into integer indices.
--default-label=<label> Label all untagged data as <label>. --default-label=<label> Label all untagged data as <label>.
--manual-label=<label> Secondary label for manually labelled data [default: edited]. --manual-label=<label> Secondary label for manually labelled data [default: edited].
...@@ -56,6 +57,7 @@ Options: ...@@ -56,6 +57,7 @@ Options:
--pretrained-model=<instance> Name of the pretrained encoder (from `pretrained_models` registry). --pretrained-model=<instance> Name of the pretrained encoder (from `pretrained_models` registry).
--balancing-strategy=<strategy> Any of `auto`, `maggotuba`, `none` [default: auto]. --balancing-strategy=<strategy> Any of `auto`, `maggotuba`, `none` [default: auto].
--overrides=<comma-separated-list> Comma-separated list of key:value pairs. --overrides=<comma-separated-list> Comma-separated list of key:value pairs.
-o <filename> --output=<filename> Predicted labels filename.
Commands: Commands:
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