add test

test/3368/cutoff.txt

+

test/3368/header/emd-3368.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<emdEntry accessCode="3368" version="1.9.6">
+    <admin>
+        <lastUpdate>2016-07-13</lastUpdate>
+    </admin>
+    <deposition>
+        <status>REL</status>
+        <depositionDate>2016-03-08</depositionDate>
+        <depositionSite>PDBe</depositionSite>
+        <processingSite>PDBe</processingSite>
+        <headerReleaseDate>2016-04-13</headerReleaseDate>
+        <mapReleaseDate>2016-06-15</mapReleaseDate>
+        <title>Cryo-EM structure of yeast cytoplasmic exosome</title>
+        <authors>Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW</authors>
+        <keywords/>
+        <primaryReference published="true">
+            <journalArticle>
+                <authors>Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW</authors>
+                <articleTitle>Cryo-EM structure of yeast cytoplasmic exosome</articleTitle>
+                <journal>cell research</journal>
+                <volume>26</volume>
+                <firstPage>822</firstPage>
+                <lastPage>837</lastPage>
+                <year>2016</year>
+                <externalReference type="pubmed">27174052</externalReference>
+                <externalReference type="doi">doi:10.1038/cr.2016.56</externalReference>
+            </journalArticle>
+        </primaryReference>
+    </deposition>
+    <map>
+        <file format="CCP4" sizeKb="2849" type="map">emd_3368.map.gz</file>
+        <dataType>Image stored as Reals</dataType>
+        <dimensions>
+            <numColumns>90</numColumns>
+            <numRows>90</numRows>
+            <numSections>90</numSections>
+        </dimensions>
+        <origin>
+            <originCol>0</originCol>
+            <originRow>0</originRow>
+            <originSec>0</originSec>
+        </origin>
+        <limit>
+            <limitCol>89</limitCol>
+            <limitRow>89</limitRow>
+            <limitSec>89</limitSec>
+        </limit>
+        <spacing>
+            <spacingCol>90</spacingCol>
+            <spacingRow>90</spacingRow>
+            <spacingSec>90</spacingSec>
+        </spacing>
+        <cell>
+            <cellA units="A">235.1772</cellA>
+            <cellB units="A">235.1772</cellB>
+            <cellC units="A">235.1772</cellC>
+            <cellAlpha units="degrees">90.0</cellAlpha>
+            <cellBeta units="degrees">90.0</cellBeta>
+            <cellGamma units="degrees">90.0</cellGamma>
+        </cell>
+        <axisOrder>
+            <axisOrderFast>X</axisOrderFast>
+            <axisOrderMedium>Y</axisOrderMedium>
+            <axisOrderSlow>Z</axisOrderSlow>
+        </axisOrder>
+        <statistics>
+            <minimum>-0.04306174</minimum>
+            <maximum>0.09575678</maximum>
+            <average>0.00022029</average>
+            <std>0.00855643</std>
+        </statistics>
+        <spaceGroupNumber>1</spaceGroupNumber>
+        <details>::::EMDATABANK.org::::EMD-3368::::</details>
+        <pixelSpacing>
+            <pixelX units="A">2.61308</pixelX>
+            <pixelY units="A">2.61308</pixelY>
+            <pixelZ units="A">2.61308</pixelZ>
+        </pixelSpacing>
+        <contourLevel source="author">0.02</contourLevel>
+        <annotationDetails>Reconstruction of Exosome-RNA18 complex</annotationDetails>
+    </map>
+    <supplement>
+        <maskSet/>
+        <sliceSet/>
+        <figureSet/>
+        <fscSet/>
+    </supplement>
+    <sample>
+        <numComponents>1</numComponents>
+        <name>Exosome complex</name>
+        <molWtTheo units="MDa">0.35</molWtTheo>
+        <molWtMethod>SDS-PAGE</molWtMethod>
+        <molWtExp units="MDa">0.35</molWtExp>
+        <sampleComponentList>
+            <sampleComponent componentID="1">
+                <entry>protein</entry>
+                <sciName>Exosome complex</sciName>
+                <synName>PM/Scl complex</synName>
+                <molWtTheo units="MDa">0.35</molWtTheo>
+                <molWtExp units="MDa">0.35</molWtExp>
+                <protein>
+                    <sciSpeciesName ncbiTaxId="4932">Saccharomyces cerevisiae</sciSpeciesName>
+                    <recombinantExpFlag>false</recombinantExpFlag>
+                    <synSpeciesName>Yeast</synSpeciesName>
+                    <externalReferences/>
+                    <natSource/>
+                    <engSource/>
+                </protein>
+            </sampleComponent>
+        </sampleComponentList>
+    </sample>
+    <experiment>
+        <vitrification>
+            <cryogenName>ETHANE</cryogenName>
+            <humidity>100</humidity>
+            <instrument>FEI VITROBOT MARK IV</instrument>
+        </vitrification>
+        <imaging>
+            <electronSource>FIELD EMISSION GUN</electronSource>
+            <imagingMode>BRIGHT FIELD</imagingMode>
+            <illuminationMode>FLOOD BEAM</illuminationMode>
+            <detector>GATAN K2 SUMMIT (4k x 4k)</detector>
+            <microscope>FEI TITAN KRIOS</microscope>
+            <date>03-JAN-2015</date>
+            <specimenHolderModel>FEI TITAN KRIOS AUTOGRID HOLDER</specimenHolderModel>
+            <acceleratingVoltage units="kV">300</acceleratingVoltage>
+        </imaging>
+        <imageAcquisition/>
+        <fitting/>
+        <specimenPreparation>
+            <specimenState>particle</specimenState>
+            <specimenConc units="mg/ml">1.25</specimenConc>
+        </specimenPreparation>
+    </experiment>
+    <processing>
+        <method>singleParticle</method>
+        <reconstruction>
+            <software>EMAN2, IMAGIC, Relion-1.3</software>
+            <ctfCorrection>Ctffind3</ctfCorrection>
+            <resolutionByAuthor>13</resolutionByAuthor>
+            <resolutionMethod>FSC 0.143, gold-standard</resolutionMethod>
+        </reconstruction>
+        <singleParticle>
+            <appliedSymmetry>C1</appliedSymmetry>
+            <numProjections>55000</numProjections>
+        </singleParticle>
+    </processing>
+</emdEntry>

test/3368/header/map_analysis.txt

+)07[?1000h[?1002h[?1005l[?1015l[?1006h8
 [?1000l
       
[?1002l
       
[?1006l
       
\ No newline at end of file

test/3368/resolution.txt

+13