dynamic text rendering on front page working

client/pages/index.vue

@@ -4,7 +4,7 @@
       The JASS web interface efficiently compute multi-trait genome-wide association study (GWAS) and enable user to interacively explore results.
       JASS can increase statistical power by leveraging pleiotropy, but also can deepen our understanding of SNPs functional effect (for a detailed explanation see the citation box below).
       Currently this website host {{initmeta.nb_phenotypes}} traits available for analysis with the omnibus test.
-      All GWAS have been pre-processed using the <a href="https://gitlab.pasteur.fr/statistical-genetics/jass_suite_pipeline">JASS pre-processing pipeline</a> and imputation of missing statistics has been conducted using the <a href="https://gitlab.pasteur.fr/statistical-genetics/raiss">RAISS software</a>, resulting in a total of {{initmeta.nb_SNPs}} SNPs available for analysis.
+      All GWAS have been pre-processed using the <a href="https://gitlab.pasteur.fr/statistical-genetics/jass_suite_pipeline">JASS pre-processing pipeline</a> and imputation of missing statistics has been conducted using the <a href="https://gitlab.pasteur.fr/statistical-genetics/raiss">RAISS software</a>, resulting in a total of {{initmeta.nb_snps}} SNPs available for analysis.
       To analyze data in your own facility and/or access supplementary joint analysis tests, please download and install the JASS python package.
     </p>
 
@@ -72,7 +72,9 @@ export default {
           short_desc: 'Run Region Analysis',
           link:'/'
         }
-      ]
+      ],
+      initmeta : [],
+
     }
   }
 }

jass/models/inittable.py

@@ -17,13 +17,17 @@ from functools import reduce
 
 options.mode.chained_assignment = None
 warnings.filterwarnings("ignore", category=tables.NaturalNameWarning)
+class InitMeta(object):
+    def __init__(self, nb_snps, nb_phenotypes):
+        self.nb_snps = nb_snps
+        self.nb_phenotypes = nb_phenotypes
 
 def get_inittable_meta(file_name):
     init_store = HDFStore(file_name)
-    nb_SNPs = init_store.get_storer("SumStatTab").nrows
+    nb_snps = init_store.get_storer("SumStatTab").nrows
     init_store.close()
     nb_phenotypes = read_hdf(file_name, "PhenoList").shape[0]
-    return (nb_SNPs, nb_phenotypes)
+    return InitMeta(nb_snps, nb_phenotypes)
 
 def get_gwasname(file_name):
     return "_".join(os.path.basename(file_name).split("_")[0:3])

jass/server.py

@@ -9,6 +9,7 @@ from webargs.flaskparser import FlaskParser
 
 from jass.config import config
 from jass.models.phenotype import get_available_phenotypes
+from jass.models.inittable import get_inittable_meta
 from jass.models.project import Project
 from jass.tasks import create_project
 from flask_cors import CORS
@@ -25,10 +26,9 @@ class PhenotypeSchema(ma.Schema):
     data_path = ma.fields.String()
 
 class InittableMetaSchema(ma.Schema):
-    nb_SNPs = ma.fields.Integer()
+    nb_snps = ma.fields.Integer()
     nb_phenotypes = ma.fields.Integer()
 
-
 class ProjectParamsSchema(ma.Schema):
     class Meta:
         unknown = ma.EXCLUDE
@@ -96,9 +96,6 @@ CORS(blp_inittable)
 def get_phenotypes():
     return get_available_phenotypes(os.path.join(config["DATA_DIR"], "initTable.hdf5"))
 
-def get_inittable_meta():
-    return get_inittable_meta(os.path.join(config["DATA_DIR"], "initTable.hdf5"))
-
 
 @blp_phenotypes.route("")
 class PhenotypesMethodView(MethodView):
@@ -109,10 +106,10 @@ class PhenotypesMethodView(MethodView):
 
 @blp_inittable.route("")
 class InitMetaMethodView(MethodView):
-    @blp_inittable.response(200, InittableMetaSchema(many=True))
+    @blp_inittable.response(200, InittableMetaSchema())
     def get(self):
         """Number of phenotype and SNPs"""
-        return get_init_meta()
+        return get_inittable_meta(os.path.join(config["DATA_DIR"], "initTable.hdf5"))
 
 @blp_projects.route("")
 class ProjectCreateMethodView(MethodView):
@@ -450,3 +447,4 @@ jass_app = JassApp()
 jass_app.register_api_blueprint(blp_phenotypes)
 jass_app.register_api_blueprint(blp_projects)
 jass_app.register_api_blueprint(blp_local_projects)
+jass_app.register_api_blueprint(blp_inittable)