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Commit ffd27c10 authored by Hanna JULIENNE's avatar Hanna JULIENNE
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fix for pvalue

parent c56e7f0b
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jass/models/plots.py
View file @ ffd27c10
......@@ -262,6 +262,9 @@ def create_quadrant_plot(work_file_path: str,
def create_qq_plot(work_file_path: str, qq_plot_path: str):
df = read_hdf(work_file_path, "SumStatTab")
pval_median = df.JASS_PVAL.median()
print("median pval")
print(pval_median)
df[['JASS_PVAL', 'UNIVARIATE_MIN_PVAL']] = replaceZeroes(
df[['JASS_PVAL', 'UNIVARIATE_MIN_PVAL']])
......
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