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Statistical-Genetics
jass
Commits
ffd27c10
Commit
ffd27c10
authored
May 18, 2022
by
Hanna JULIENNE
Browse files
fix for pvalue
parent
c56e7f0b
Changes
1
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Inline
Side-by-side
jass/models/plots.py
View file @
ffd27c10
...
...
@@ -262,6 +262,9 @@ def create_quadrant_plot(work_file_path: str,
def
create_qq_plot
(
work_file_path
:
str
,
qq_plot_path
:
str
):
df
=
read_hdf
(
work_file_path
,
"SumStatTab"
)
pval_median
=
df
.
JASS_PVAL
.
median
()
print
(
"median pval"
)
print
(
pval_median
)
df
[[
'JASS_PVAL'
,
'UNIVARIATE_MIN_PVAL'
]]
=
replaceZeroes
(
df
[[
'JASS_PVAL'
,
'UNIVARIATE_MIN_PVAL'
]])
...
...
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