clean up docker-compose file

• remove commented files
• share local data and code dirs
• autorestart when python code changed

ansible/deploy.yaml

@@ -7,14 +7,17 @@
     - name: stop JASS service
       systemd: state=stopped name=jass-uwsgi enabled=true
       ignore_errors: yes
+      when: not docker
     # stop nginx service
     - name: stop nginx service
       systemd: state=stopped name=nginx enabled=true
       ignore_errors: yes
+      when: not docker
     # stop celery service
     - name: stop celery service
       systemd: state=stopped name=celery enabled=true
       ignore_errors: yes
+      when: not docker
     - name: update yum
       become: true
       yum: name=* state=latest
@@ -61,22 +64,41 @@
     - pip: 
         name: wheel
         executable: pip3.6
-    # install jass
-    - pip: 
+    # install jass on server
+    - name: install jass from gitlab
+      pip: 
         name: git+https://gitlab.pasteur.fr/statistical-genetics/jass.git
         state: forcereinstall
         executable: pip3.6
-    # install frozen JASS requirements
+      when: not docker
     - name: download JASS frozen requirements file
       get_url:
-        url: https://gitlab.pasteur.fr/statistical-genetics/jass/raw/master/requirements-working.txt
-        dest: /tmp/requirements-working.txt
+        url: https://gitlab.pasteur.fr/statistical-genetics/jass/raw/master/requirements.txt
+        dest: /tmp/requirements.txt
         force: yes
+      when: not docker
     - pip:
-        requirements: /tmp/requirements-working.txt
+        requirements: /tmp/requirements.txt
         state: forcereinstall
         executable: pip3.6
-    - pip: 
+      when: not docker
+    # install jass on docker
+    - name: install jass from local
+      pip:
+        editable: true
+        name: file:///code/
+        state: forcereinstall
+        executable: pip3.6
+      when: docker
+    - name: install jass deps from local
+      pip:
+        requirements: /code/ansible/reqs-docker.txt
+        state: forcereinstall
+        executable: pip3.6
+      when: docker
+    # install python web deps
+    - name: install uwsgi
+      pip: 
         name: uwsgi
         executable: pip3.6
       become: true
@@ -95,7 +117,7 @@
       copy: 
         src: jass_uwsgi.ini
         dest: /var/jass_data
-        owner: jass
+        owner: '{{ deploy_user_name }}'
         group: nginx
     - name: copy celeryd configuration file
       copy: 
@@ -112,9 +134,12 @@
     # start uwsgi service
     - name: start JASS service if relevant
       systemd: state=started name=jass-uwsgi enabled=true daemon_reload=true
+      when: not docker
     # start nginx service
     - name: start NGINX service if relevant
       systemd: state=started name=nginx enabled=true daemon_reload=true
+      when: not docker
     # start celery service
     - name: start celery service if relevant
       systemd: state=started name=celery enabled=true daemon_reload=true
+      when: not docker