Skip to content
Snippets Groups Projects
Commit 11ee29ad authored by Hanna JULIENNE's avatar Hanna JULIENNE
Browse files

typo

parent 14a70c94
No related branches found
No related tags found
1 merge request!1Hot fix
Hide whitespace changes
Inline Side-by-side
jass_preprocessing/map_reference.py
+ 1
− 1
View file @ 11ee29ad
...@@ -82,7 +82,7 @@ def map_on_ref_panel(gw_df , ref_panel, index_type="rs-number"): ...@@ -82,7 +82,7 @@ def map_on_ref_panel(gw_df , ref_panel, index_type="rs-number"):
else: else:
raise ValueError("index_type can take only two values: 'rs-number' or 'positional'") raise ValueError("index_type can take only two values: 'rs-number' or 'positional'")
if (("pos" in merge_GWAS.columns) and ("POS" in merge_GWAS.columns)) if (("pos" in merge_GWAS.columns) and ("POS" in merge_GWAS.columns)):
if (merge_GWAS.pos == merge_GWAS.POS).mean()> 0.95): if (merge_GWAS.pos == merge_GWAS.POS).mean()> 0.95):
merge_GWAS = merge_GWAS.loc[(merge_GWAS.pos == merge_GWAS.POS)] merge_GWAS = merge_GWAS.loc[(merge_GWAS.pos == merge_GWAS.POS)]
else: else:
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment