Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
J
jass_preprocessing
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Statistical-Genetics
jass_preprocessing
Commits
8d8bb392
Commit
8d8bb392
authored
2 years ago
by
Hanna JULIENNE
Browse files
Options
Downloads
Patches
Plain Diff
Remove old irrelevant comment
parent
191e2519
No related branches found
Branches containing commit
No related tags found
Tags containing commit
No related merge requests found
Pipeline
#97583
passed
2 years ago
Stage: test
Stage: deploy
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
jass_preprocessing/__main__.py
+0
-11
0 additions, 11 deletions
jass_preprocessing/__main__.py
with
0 additions
and
11 deletions
jass_preprocessing/__main__.py
+
0
−
11
View file @
8d8bb392
...
@@ -11,17 +11,6 @@ import time
...
@@ -11,17 +11,6 @@ import time
import
argparse
import
argparse
#| variable name | description | current default value|
#|---------------|-------------|----------------------|
#| netPath | Main project folder, must end by "/" | /mnt/atlas/ |
#| args.gwas_info* | Path to the file describing the format of the individual GWASs files | netPath+'PCMA/1._DATA/RAW.GWAS/args.gwas_info.csv' |
#| GWAS_path* | Path to the folder containing the GWASs summ stat files, must end by "/" | netPath+'PCMA/1._DATA/RAW.GWAS/'|
#| diagnostic_folder | folder for histograms of sample size distribution among SNPs | /mnt/atlas/PCMA/1._DATA/sample_size_distribution/ |
#| ldscore_format | data formated to use LDscore, 1 file per study | /mnt/atlas/PCMA/1._DATA/ldscore_data/ |
#| REF_filename* | file containing the reference panel for imputation | netPath+'PCMA/0._REF/1KGENOME/summary_genome_Filter_part2.out' |
#| pathOUT | **unused in main_preprocessing.py** | netPath+'PCMA/1._DATA/RAW.summary/'|
#| ImpG_output_Folder | main ouput folder | netPath+ 'PCMA/1._DATA/preprocessing_test/' |
def
raise_duplicated_index
(
tag
):
def
raise_duplicated_index
(
tag
):
duplicated_index
=
tag
.
duplicated
()
duplicated_index
=
tag
.
duplicated
()
raise
ValueError
(
"'
Consortium_Outcome
'
are duplicated for: {0}
"
.
format
(
duplicated_index
))
raise
ValueError
(
"'
Consortium_Outcome
'
are duplicated for: {0}
"
.
format
(
duplicated_index
))
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment