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Commit 8d8bb392 authored by Hanna  JULIENNE's avatar Hanna JULIENNE
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Remove old irrelevant comment

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...@@ -11,17 +11,6 @@ import time ...@@ -11,17 +11,6 @@ import time
import argparse import argparse
#| variable name | description | current default value|
#|---------------|-------------|----------------------|
#| netPath | Main project folder, must end by "/" | /mnt/atlas/ |
#| args.gwas_info* | Path to the file describing the format of the individual GWASs files | netPath+'PCMA/1._DATA/RAW.GWAS/args.gwas_info.csv' |
#| GWAS_path* | Path to the folder containing the GWASs summ stat files, must end by "/" | netPath+'PCMA/1._DATA/RAW.GWAS/'|
#| diagnostic_folder | folder for histograms of sample size distribution among SNPs | /mnt/atlas/PCMA/1._DATA/sample_size_distribution/ |
#| ldscore_format | data formated to use LDscore, 1 file per study | /mnt/atlas/PCMA/1._DATA/ldscore_data/ |
#| REF_filename* | file containing the reference panel for imputation | netPath+'PCMA/0._REF/1KGENOME/summary_genome_Filter_part2.out' |
#| pathOUT | **unused in main_preprocessing.py** | netPath+'PCMA/1._DATA/RAW.summary/'|
#| ImpG_output_Folder | main ouput folder | netPath+ 'PCMA/1._DATA/preprocessing_test/' |
def raise_duplicated_index(tag): def raise_duplicated_index(tag):
duplicated_index = tag.duplicated() duplicated_index = tag.duplicated()
raise ValueError("'Consortium_Outcome' are duplicated for: {0}".format(duplicated_index)) raise ValueError("'Consortium_Outcome' are duplicated for: {0}".format(duplicated_index))
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