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Commit 9df7ebfb authored by Hanna  JULIENNE's avatar Hanna JULIENNE
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Update README.md

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# Preprocessing package for cleaning and formating data for JASS # Preprocessing package for cleaning and formating data for JASS
This helper package convert heterogeneous GWAS summary statistic format to This helper package convert heterogeneous GWAS summary statistic format to
the IMPG input format. the IMPG input format.
## Installation The package is documented at http://statistical-genetics.pages.pasteur.fr/JASS_Pre-processing/
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*Requirement* :
## Usage
Once installed the preprocessing can be launch in the following manner:
## reference panel format:
The user is expected to provide a reference panel with the following
column naming and column types:
| chr | pos | snp_id | ref | alt | MAF |
|-----|-----|--------|-----|-----|-----|
|1 |13116 |rs62635286 | T| G| 0.0970447|
|1 |13118 |rs200579949 |A |G |0.0970447|
|1 |14604 |rs541940975 |A |G |0.147564|
|1 |14930 |rs75454623 |A |G |0.482228|
***
## Output format
['rsID', 'pos', 'A0', "A1", "Z" ]
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