DEBUG: remove filter when saving results

raiss/filter_format_output.py

@@ -20,5 +20,5 @@ def filter_output(zscores, fout, R2_threshold = 0.6, minimum_ld = 5):
     chr_fo = zscores[['index', 'pos', 'A0', 'A1', 'Z', 'Var', "ld_score"]]
     chr_fo["imputation_R2"] = 1-chr_fo["Var"]
     chr_fo.columns = ['rsID','pos','A0','A1','Z', 'Var', "ld_score", "imputation_R2"]
-
-    chr_fo.loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)].to_csv(fout, sep="\t", index=False)
+    #loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)]
+    chr_fo.to_csv(fout, sep="\t", index=False)