@@ -121,6 +121,21 @@ All PvSTATEM partner are welcome to propose new contributions to this repository
6. Preserve overall code structure by favoring `tidyverse` syntax and `ggplot` plots over base R calls. Base R is acceptable but should be refactored into `tidyverse` syntax as soon as possible,
7. Document all scripts and methods both inline (comments) and in this README.md (respecting the template just below)
## 02_OBSERVATIONAL
Set of methods used to explore and analyze the content of the **Observational Study** databases hosted by partner institutions.
### R environment setup and database extraction
#### Scripts involed
*[OBSERVATIONAL_00_R_environment.R](<02_OBSERVATIONAL/OBSERVATIONAL_00_R_environment.R>): load all required packages (or complain they are missing) and sets global variables for the 02_OBSERVATIONAL project.
*[OBSERVATIONAL_01_dump_REDCap_database.R](<02_OBSERVATIONAL/OBSERVATIONAL_01_dump_REDCap_database.R>): extract database from the REDCap server that is passed into the `RCON_OBSERVATIONAL` variable.
#### Outputs
*`dat_observational_raw`: the raw database from REDCap.
## README.md template
The README.md should respect the following conventions:
