version 1.4 with minimum number of valid k-mer option.
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- configure.ac 1 addition, 1 deletionconfigure.ac
- doc/rock.pod 9 additions, 1 deletiondoc/rock.pod
- src/Filter.hpp 1 addition, 1 deletionsrc/Filter.hpp
- src/FqAuxBackend.cpp 66 additions, 60 deletionssrc/FqAuxBackend.cpp
- src/FqAuxBackend.h 11 additions, 6 deletionssrc/FqAuxBackend.h
- src/FqBaseBackend.cpp 156 additions, 8 deletionssrc/FqBaseBackend.cpp
- src/FqBaseBackend.h 77 additions, 0 deletionssrc/FqBaseBackend.h
- src/FqMainBackend.cpp 86 additions, 128 deletionssrc/FqMainBackend.cpp
- src/FqMainBackend.h 5 additions, 2 deletionssrc/FqMainBackend.h
- src/ROCKparams.cpp 119 additions, 67 deletionssrc/ROCKparams.cpp
- src/ROCKparams.h 22 additions, 1 deletionsrc/ROCKparams.h
- src/fqreader.cpp 15 additions, 3 deletionssrc/fqreader.cpp
- src/fqreader.h 2 additions, 2 deletionssrc/fqreader.h
- src/main_utils.cpp 6 additions, 2 deletionssrc/main_utils.cpp
- src/main_utils.h 4 additions, 1 deletionsrc/main_utils.h
- src/read_utils.cpp 1 addition, 2 deletionssrc/read_utils.cpp
- src/read_utils.h 1 addition, 0 deletionssrc/read_utils.h
- src/rock.cpp 2 additions, 3 deletionssrc/rock.cpp
- src/rock_commons.h 2 additions, 2 deletionssrc/rock_commons.h
- src/srp.h 2 additions, 0 deletionssrc/srp.h
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