version 2.0_beta where PE reads are processed separately and selected or...
version 2.0_beta where PE reads are processed separately and selected or removed from the cms if at least one of the PE has a median coverage below threshold.
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- configure.ac 1 addition, 1 deletionconfigure.ac
- src/CountMinSketch.hpp 39 additions, 12 deletionssrc/CountMinSketch.hpp
- src/Filter.hpp 4 additions, 4 deletionssrc/Filter.hpp
- src/FqMainBackend.cpp 6 additions, 9 deletionssrc/FqMainBackend.cpp
- src/FqMainBackend.h 3 additions, 3 deletionssrc/FqMainBackend.h
- src/ReadProcessor.cpp 5 additions, 5 deletionssrc/ReadProcessor.cpp
- src/ReadProcessor.h 2 additions, 1 deletionsrc/ReadProcessor.h
- src/fqreader.cpp 2 additions, 2 deletionssrc/fqreader.cpp
- src/read_utils.cpp 7 additions, 4 deletionssrc/read_utils.cpp
- src/read_utils.h 1 addition, 1 deletionsrc/read_utils.h
- src/rock_commons.h 5 additions, 3 deletionssrc/rock_commons.h
- src/unit_test_cms.cpp 24 additions, 6 deletionssrc/unit_test_cms.cpp
- src/unit_test_fqreader.cpp 26 additions, 79 deletionssrc/unit_test_fqreader.cpp
- src/unit_test_read_utils.cpp 15 additions, 26 deletionssrc/unit_test_read_utils.cpp
- test/rock_mem.sh 10 additions, 4 deletionstest/rock_mem.sh
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