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Commit ac58b375 authored by Veronique Legrand's avatar Veronique Legrand
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updated test case with + char in identifier for PE reads.

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src/unit_test_fqreader.cpp
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...@@ -717,7 +717,7 @@ void test_processBufPEWithPlusChar() { ...@@ -717,7 +717,7 @@ void test_processBufPEWithPlusChar() {
i_dim::iterator it_offs; i_dim::iterator it_offs;
k_dim::iterator it_struct; k_dim::iterator it_struct;
unsigned char f_id1=1; unsigned char f_id1=1;
std::string bufstr_PE1="@SRR001666.4 071112_SLXA-EAS1_s_7:5:1:792:346/2\n\ std::string bufstr_PE1="@SRR001666.4 + @071112_SLXA-EAS1_+s_7:5:1:792:346/2\n\
AAAGTTAACGAACGCGCGAAAGGTCTGGAAGGTATC\n\ AAAGTTAACGAACGCGCGAAAGGTCTGGAAGGTATC\n\
+\n\ +\n\
IIIIIIII@+IIIIIIIIB@7IIF=III+CIID0I+\n\ IIIIIIII@+IIIIIIIIB@7IIF=III+CIID0I+\n\
...@@ -729,7 +729,7 @@ AAAA/EEEE#########EEEE###############E##############EE#EEEE#E#EE#/EEEEEEEAEEE#EE ...@@ -729,7 +729,7 @@ AAAA/EEEE#########EEEE###############E##############EE#EEEE#E#EE#/EEEEEEEAEEE#EE
ATTATATGATGCAGTAAAAGCCATTGGTGAAGAGCTATGCCCACAATTAGGTATTACTATTCCGGTGGGTAAGGACTCAATGTCCATGAAAACGCGTTGGCAAGATGATCAAGGGAAAACGAAAGAAGTTATTTCACCGCTCTCTTTAGTT\n\ ATTATATGATGCAGTAAAAGCCATTGGTGAAGAGCTATGCCCACAATTAGGTATTACTATTCCGGTGGGTAAGGACTCAATGTCCATGAAAACGCGTTGGCAAGATGATCAAGGGAAAACGAAAGAAGTTATTTCACCGCTCTCTTTAGTT\n\
+\n\ +\n\
AAAAAEEEEEEEEEEEEE/EEEEEEEEEEEEEEEEEEEEE<EEEAEEEEA<EAEEEEEEEAAAAE<EEEE/EEEEAAEEEEEEE<EEEEAAEEE<AE<EE<EEEEAEE/EE/EEEE<EE/EE/E/EEEEEAE<E</<<<AE<AAAEEE/AE\n"; AAAAAEEEEEEEEEEEEE/EEEEEEEEEEEEEEEEEEEEE<EEEAEEEEA<EAEEEEEEEAAAAE<EEEE/EEEEAAEEEEEEE<EEEEAAEEE<AE<EE<EEEEAEE/EE/EEEE<EE/EE/E/EEEEEAE<E</<<<AE<AAAEEE/AE\n";
std::string bufstr_PE2="@SRR001666.4 071112_SLXA-EAS1_s_7:5:1:792:346/2\n\ std::string bufstr_PE2="@SRR001666.4 + @071112_SLXA-EAS1_+s_7:5:1:792:346/2\n\
AAAGTTAACGAACGCGCGAAAGGTCTGGAAGGTATC\n\ AAAGTTAACGAACGCGCGAAAGGTCTGGAAGGTATC\n\
+\n\ +\n\
IIIIIIII@+IIIIIIIIB@7IIF=III+CIID0I+\n\ IIIIIIII@+IIIIIIIIB@7IIF=III+CIID0I+\n\
......
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