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Commit cdd6f838 authored by Veronique Legrand's avatar Veronique Legrand
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error fix.

parent 13c684fd
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...@@ -448,6 +448,7 @@ rm -f tmp/klebsiella_5_2_2_qual_thres.fq ...@@ -448,6 +448,7 @@ rm -f tmp/klebsiella_5_2_2_qual_thres.fq
echo " " echo " "
echo "##################################################################################" echo "##################################################################################"
echo "testing ROCK with a quality score threshold for nucleotides, PE processed separately (lenient filter) and -m option" echo "testing ROCK with a quality score threshold for nucleotides, PE processed separately (lenient filter) and -m option"
../src/rock -C 100 -c 1 -l 2 -q 2 -m 2 -p 2 -o ${srcdir}/data/iofiles.args/output_files_2_PE_separated_lenient.txt ${srcdir}/data/fastq.raw/klebsiella_6_1_bad_scores.fq,${srcdir}/data/fastq.raw/klebsiella_6_2_bad_scores.fq >/dev/null || exit 210 ../src/rock -C 100 -c 1 -l 2 -q 2 -m 2 -p 2 -o ${srcdir}/data/iofiles.args/output_files_2_PE_separated_lenient.txt ${srcdir}/data/fastq.raw/klebsiella_6_1_bad_scores.fq,${srcdir}/data/fastq.raw/klebsiella_6_2_bad_scores.fq >/dev/null || exit 210
[ -f "tmp/klebsiella_6_1_bad_scores.undefined.fq" ] || exit 211 [ -f "tmp/klebsiella_6_1_bad_scores.undefined.fq" ] || exit 211
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