started to develop part 2: retrieveing reads and transforming them into a...
started to develop part 2: retrieveing reads and transforming them into a serie of number. To do that, had to refactor a little bit what I had done for part1 : fqreader and backends. Also added some tests for part2 but they are in unit_test_fqreader.cpp for the moment.
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- data/test_PE1_2.fq 160 additions, 0 deletionsdata/test_PE1_2.fq
- data/test_PE2_2.fq 160 additions, 0 deletionsdata/test_PE2_2.fq
- src/FqAuxBackend.cpp 14 additions, 30 deletionssrc/FqAuxBackend.cpp
- src/FqAuxBackend.h 4 additions, 11 deletionssrc/FqAuxBackend.h
- src/FqBaseBackend.cpp 75 additions, 0 deletionssrc/FqBaseBackend.cpp
- src/FqBaseBackend.h 43 additions, 0 deletionssrc/FqBaseBackend.h
- src/FqConstants.h 6 additions, 0 deletionssrc/FqConstants.h
- src/FqMainBackend.cpp 4 additions, 22 deletionssrc/FqMainBackend.cpp
- src/FqMainBackend.h 3 additions, 1 deletionsrc/FqMainBackend.h
- src/Makefile.am 7 additions, 3 deletionssrc/Makefile.am
- src/fqreader.cpp 28 additions, 17 deletionssrc/fqreader.cpp
- src/fqreader.h 1 addition, 3 deletionssrc/fqreader.h
- src/read_utils.cpp 82 additions, 0 deletionssrc/read_utils.cpp
- src/read_utils.h 33 additions, 0 deletionssrc/read_utils.h
- src/rock.cpp 1 addition, 1 deletionsrc/rock.cpp
- src/rock_types.h 29 additions, 0 deletionssrc/rock_types.h
- src/srp.h 16 additions, 3 deletionssrc/srp.h
- src/unit_test_fqreader.cpp 125 additions, 3 deletionssrc/unit_test_fqreader.cpp
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