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Véronique LEGRAND
PTV
Commits
345250b6
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345250b6
authored
1 year ago
by
Veronique Legrand
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put a more generic version number in Readme file
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README.md
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@@ -27,8 +27,8 @@ genome and align them on the bacterial genome using the same mapping function. T
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@@ -27,8 +27,8 @@ genome and align them on the bacterial genome using the same mapping function. T
The previous PhageTerm program (single phage analysis only) is still available at https://sourceforge.net/projects/phageterm/ (for versions <3.0.0)
The previous PhageTerm program (single phage analysis only) is still available at https://sourceforge.net/projects/phageterm/ (for versions <3.0.0)
A Galaxy wrapper version is also available for the
previous version
at https://galaxy.pasteur.fr
(only for the first version PhageTerm)
.
A Galaxy wrapper version is also available for the
first version of PhageTerm
at https://galaxy.pasteur.fr.
PhageTermVirome is not implemented on Galaxy yet
)
.
PhageTermVirome is not implemented on Galaxy yet.
Since version 4.1, PhageTerm can work in 2 modes:
Since version 4.1, PhageTerm can work in 2 modes:
-
the usual mono machine mode (parallelization on several cores on the same machine).
-
the usual mono machine mode (parallelization on several cores on the same machine).
...
@@ -62,8 +62,8 @@ version 4.2 and higher work with python 3.9 up to python 3.13.
...
@@ -62,8 +62,8 @@ version 4.2 and higher work with python 3.9 up to python 3.13.
export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
-
download the .tar.gz file containing PhageTermVirome latest vesion from here : https://
test.
pypi.org/project/phagetermvirome/#files
-
download the .tar.gz file containing PhageTermVirome latest vesion from here : https://pypi.org/project/phagetermvirome/#files
and unzip it. This should create a "phagetermvirome-4.
2
" directory. Go into it and type:
and unzip it. This should create a "phagetermvirome-4.
X
" directory. Go into it and type:
poetry install
poetry install
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