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Véronique LEGRAND
PTV
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f3eb8dc5
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f3eb8dc5
authored
4 years ago
by
Veronique Legrand
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updated README with information for python3 version
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f3eb8dc5
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@@ -7,7 +7,7 @@ PhageTerm.py - run as command line in a shell
VERSION
=======
Version
3.1
.0
Version
4.0
.0
INTRODUCTION
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@@ -35,11 +35,18 @@ Since version 3.0.0, PhageTerm can work in 2 modes:
- mono machine mode (parallelization on several cores on tne same machine).
- multi machine mode (parallelization on several machines, using intermediate files for data exchange).
The default mode is mono machine.
Version 3.0.0 up to version 4.0 work with python 2.7
Since version 4.0, PhageTerm works with python 3.7
PREREQUISITES
=============
For version 3.0 up to version 4.0 (not included)
Unix/Linux
- Python 2.7.X
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@@ -52,12 +59,30 @@ Unix/Linux
- reportlab 3.3.0
A conda virtualenv containing python2.7 and all dependencies is provided for convenience so that users
don't need to install anything else than miniconda.
don't need to install anything else than miniconda or conda.
For version 4.0
Unix/Linux
- Python 3.7
- matplotlib
- numpy
- pandas
- sklearn
- scipy
- statsmodels
- reportlab
A conda virtualenv containing python3.7 and all dependencies is provided for convenience so that users
don't need to install anything else than miniconda or conda.
USING THE CONDA VIRTUALENV
==========================
First install miniconda (you don't even need to have python 2.7 installed on your machine for that;
First install miniconda (you don't even need to have python 2.7
or python 3.7
installed on your machine for that;
miniconda contains it): https://docs.conda.io/en/latest/miniconda.html
Then, create the miniconda environment from the PhageTerm_env.yml file:
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