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    • Maximilian Press's avatar
      Fixed code creating warnings on py3 · 6798c41d
      Maximilian Press authored
      * IData_handling.genomeFastaRecovery had an extra open() of the file,
      and was reading the file without closing it, unsafely. Removed unneeded
      open().
      * main_utils.checkFastaFile was using "U" option in opening files, not
      needed and deprecated.
      * read_Coverage_res was using time.clock() in a couple of places, which
      is deprecated. replaced with time.time().
      6798c41d
  14. Aug 03, 2020
    • Maximilian Press's avatar
      Easy py2-compatible py3 updates, round 1 · dfa4e5aa
      Maximilian Press authored
      Changed _modules/ and PhageTerm.py and
      test_functions_PhageTerm_for_multi.py to use py3-style print functions.
      
      Py2-compatible due to __future__ imports.
      
      Also added both-versions compatible translate method in
      _modules/utilities.py.
      dfa4e5aa
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