Commits · d95a3652f37985965c65e20edb67df151e3deadc · Véronique LEGRAND / PTV · GitLab

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Jun 17, 2022
- updated version number · d95a3652
  Veronique Legrand authored 3 years ago
  
  d95a3652
Jun 08, 2022
- ad forgotten to rename -n option into --report_title in examples · d414349b
  Veronique Legrand authored 3 years ago
  
  d414349b
- fixed typo in help message · ab9e83ff
  Veronique Legrand authored 3 years ago
  
  ab9e83ff
Mar 31, 2021
- did some cleaning in traces · 1ddf1cb3
  Veronique Legrand authored 4 years ago
  
  1ddf1cb3
Mar 05, 2021
- now printing pvalue and pvalue adj with peaks in workflow report plus did some cleaning · 0fc42706
  Veronique Legrand authored 4 years ago
  
  0fc42706
Feb 15, 2021
- bug fix: there was a confusion between report title and name of the phage · 250bfaf1
  Veronique Legrand authored 4 years ago
  
  250bfaf1
Jan 28, 2021
- removed unuseful traces · 6a775b04
  Veronique Legrand authored 4 years ago
  
  6a775b04
Nov 23, 2020
- ported non regression tests to python 3 · e8b93c72
  Veronique Legrand authored 4 years ago
  
  e8b93c72
Nov 13, 2020
- added traces · b0824f84
  Veronique Legrand authored 4 years ago
  
  b0824f84
Oct 23, 2020
- added option for running non regression tests · e924fd2a
  Veronique Legrand authored 4 years ago
  
  e924fd2a
Aug 05, 2020
- cast main_utils.InputDerivedDataArgs.mean_virome to int for py3 compatibility... · 01a9630c
  Maximilian Press authored 4 years ago
  01a9630c
Aug 04, 2020
- Fixed code creating warnings on py3 · 6798c41d
  Maximilian Press authored 4 years ago
  6798c41d
Aug 03, 2020
- Easy py2-compatible py3 updates, round 1 · dfa4e5aa
  Maximilian Press authored 4 years ago
  dfa4e5aa
Jul 31, 2020
- Updated Usage, 5-->C5, 3-->C3 for tests. · b57c6865
  Maximilian Press authored 4 years ago
  
  b57c6865
- Improve handling of test arguments, env problem · e75dbc15
  Maximilian Press authored 4 years ago
  e75dbc15
Jun 04, 2020
- bug fix on checkpoints · 4e768eb9
  Véronique LEGRAND authored 5 years ago
  
  4e768eb9
May 29, 2020
- implemented checkpoint mechanism to save temporary results of reads mapping and restart from them · b5b63a12
  Véronique LEGRAND authored 5 years ago
  
  b5b63a12
Apr 30, 2020
- did some refactoring to reduce the number of arguments of readsCoverage · a8572c8c
  Véronique LEGRAND authored 5 years ago
  
  a8572c8c
Apr 15, 2020
- fixed variable names so that they match option names · 605f2f82
  Véronique LEGRAND authored 5 years ago
  
  605f2f82
Apr 10, 2020
- finilizing 1rst multimachine version of phageterm · ff051fe3
  Véronique LEGRAND authored 5 years ago
  
  ff051fe3
Apr 09, 2020
- Finalizing version to have phageTerm able to run on several machines (on a cluster or not) · 81d2ff51
  Véronique LEGRAND authored 5 years ago
  
  81d2ff51
Apr 06, 2020
- first version of phageterm running on several machines · f901d8d5
  Véronique LEGRAND authored 5 years ago
  
  f901d8d5
Mar 24, 2020
- work in progress · 76d92d7e
  Véronique LEGRAND authored 5 years ago
  
  76d92d7e
Mar 23, 2020
- work in progress for multi machine version of phageTerm · fdd4722e
  Véronique LEGRAND authored 5 years ago
  
  fdd4722e
Mar 18, 2020
- going to test on the cluster · 1ebb208f
  Véronique LEGRAND authored 5 years ago
  
  1ebb208f
Feb 25, 2020
- work in progress for multi machine PhageTerm · 589199d6
  Veronique Legrand authored 5 years ago
  
  589199d6
Feb 19, 2020
- work in progress · 2f9a1802
  Veronique Legrand authored 5 years ago
  
  2f9a1802
Jan 29, 2020
- bug fix on checking options consistency. · 3a2171a7
  Véronique LEGRAND authored 5 years ago
  
  3a2171a7
Jan 28, 2020
- work in progress for multi machine (cluster) mode · e8ea4526
  Veronique Legrand authored 5 years ago
  
  e8ea4526
Jan 24, 2020
- work in process for processing the mapping results produced by the GPU on... · 5e93ae2d
  Véronique LEGRAND authored 5 years ago
  5e93ae2d
Jan 12, 2020
- work in progress iterating over GPU mapping results. · 8e0f956c
  Véronique LEGRAND authored 5 years ago
  
  8e0f956c
Nov 15, 2019
- work in progress mapping reads by chunks · e5c6cde0
  Véronique LEGRAND authored 5 years ago
  
  e5c6cde0
Nov 12, 2019
- work in progress · 8a6ff763
  Veronique Legrand authored 5 years ago
  
  8a6ff763
May 09, 2019
- 1rst working GPU version of phageterm. To be optimized · 4a1460a7
  vlegrand authored 6 years ago
  
  4a1460a7
Feb 26, 2019
- added comments in doxygen format for doc generation, added traces in debug... · f9b89de8
  Veronique Legrand authored 6 years ago
  f9b89de8
Feb 21, 2019
- specify NA when phagename is not given in input · 0dc99d9a
  Veronique Legrand authored 6 years ago
  
  0dc99d9a
May 30, 2018
- bug fixed in handling options · 23f870d7
  Veronique Legrand authored 7 years ago
  
  23f870d7
May 29, 2018
- bug fix for the test on Mu packaging · ed1e9168
  Veronique Legrand authored 7 years ago
  
  ed1e9168
- work in progress. Had to do some refactoring to re-use parts of exsting code for gpu · 184ed946
  Veronique Legrand authored 7 years ago
  
  184ed946