@@ -37,11 +37,10 @@ The binary file also contains a bloom filter corresponding to the selected kmers
### Matching alleles on sequences:
```bash
./bin/bpm match -alleles <alleles.fasta> -bin <alleles.bin> -sequences <sequences.fasta>
./bin/bpm match -bin <alleles.bin> -sequences <sequences.fasta>
```
Arguments:
***-a** or **-alleles**: A fasta file containing all the alleles that you want to search.
***-b** or **-bin**: A binary file containing one kmer of size 32 (to be computed on 64 bits) that represent each allele and the offset inside the sequence. This file also contains a bloom filter corresponding to the selected kmers.
***-b** or **-bin**: A binary file generated by the indexing part. This file contains relevant kmers, a bloom filter and the allele sequences.
***-s** of **-sequences**: A fasta file containing the sequence(s) where you want to find the alleles.
