Commit a304859c authored by Yoann Dufresne's avatar Yoann Dufresne
Browse files

main adaptation for threshold

parent c9f90cbf
......@@ -13,6 +13,7 @@ def parse_arguments():
parser.add_argument('--output_prefix', '-o', default="d2_graph", help="Output file prefix.")
parser.add_argument('--threads', '-t', default=8, type=int, help='Number of thread to use for dgraph computation')
parser.add_argument('--debug', '-d', action='store_true', help="Debug")
parser.add_argument('--edge_divergence_threshold', '-dt', default=0.25, type=float, help='Divergence threshold value to link two udgs in the d2-graph')
parser.add_argument('--maxclq', '-c', action='store_true', help="Enable max clique community detection (default behaviour)")
parser.add_argument('--louvain', '-l', action='store_true', help="Enable Louvain community detection instead of all max-cliques")
parser.add_argument('--comtest', '-k', action='store_true', help="Enable [placeholder] community detection algorithm instead of max-cliques")
......@@ -64,7 +65,7 @@ def main():
d2g = d2.D2Graph(G, debug=debug, debug_path=debug_path)
dprint("D2 graph object created")
dprint("constructing d2 graph from barcode graph")
d2g.construct_from_barcodes(neighbor_threshold=d2_threshold, clique_mode=clique_mode, threads=args.threads)
d2g.construct_from_barcodes(neighbor_threshold=args.edge_divergence_threshold, clique_mode=clique_mode, threads=args.threads)
dprint("[debug] d2 graph constructed")
# d2g.save(f"{args.output_prefix}.tsv")
......
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