Commits · c6ef39a845cb96b9513731c53be80a38cc1768ba · Yoann DUFRESNE / linked reads molecule ordering

May 25, 2020
- remove dependance to barcode graph in lcp graph loading · c6ef39a8
  Yoann Dufresne authored 5 years ago
  
  c6ef39a8
May 16, 2020
- path search refactoring · 678f0477
  Yoann Dufresne authored 5 years ago
  
  678f0477
- refactor solution class · 5fd16e32
  Yoann Dufresne authored 5 years ago
  
  5fd16e32
May 14, 2020
- naive branch & bound · eeab1f7a
  Yoann Dufresne authored 5 years ago
  
  eeab1f7a
- ../deconvolution/main/d2_to_path_simple.py · 5183ab17
  Rayan CHIKHI authored 5 years ago
  
  5183ab17
Apr 29, 2020
- optimization for divergence computation · 061f4092
  Yoann Dufresne authored 5 years ago
  
  061f4092
Apr 28, 2020
- clique graph tests · 498df34a
  Yoann Dufresne authored 5 years ago
  
  498df34a
Apr 17, 2020
- simplification of d2 construction · 2122230c
  Yoann Dufresne authored 5 years ago
  
  2122230c
Apr 10, 2020
- add debug graph outputing fort mwm · e6072e12
  Yoann Dufresne authored 5 years ago
  
  e6072e12
Feb 13, 2020
- bugfix: fake d2 generation due to variable collisions · 59ef6b96
  Yoann Dufresne authored 5 years ago
  
  59ef6b96
Jan 14, 2020
- index and clique modification · 02f87907
  Yoann Dufresne authored 5 years ago
  
  02f87907
Jan 13, 2020
- refactoring of the code to match package tree · f78f16f2
  Yoann Dufresne authored 5 years ago
  
  f78f16f2
Jan 10, 2020
- refactor index · dd190fee
  Yoann Dufresne authored 5 years ago
  
  dd190fee
Jan 09, 2020
- refactor directories · 5e05d845
  Yoann Dufresne authored 5 years ago
  
  5e05d845
Jan 03, 2020
- some of my tests on alternative d_graphs construction techniques · b906f1b9
  rchikhi authored 5 years ago
  
  b906f1b9
Dec 30, 2019
- deconvolution updates · 288449cc
  Yoann Dufresne authored 5 years ago
  
  288449cc
Dec 11, 2019
- some debug info to d2 graph construction · be448d6c
  rchikhi authored 5 years ago
  
  be448d6c
Nov 27, 2019
- remove execuption variability · 47b4117e
  Yoann Dufresne authored 5 years ago
  
  47b4117e
Nov 04, 2019
- bugfix: unpredictable filter counts · 6802438f
  Yoann Dufresne authored 5 years ago
  
  6802438f
Sep 04, 2019
- cleaning workspace · e8599455
  Yoann Dufresne authored 5 years ago
  
  e8599455
Aug 20, 2019
- unitigs generation ok · e7f0a973
  Yoann Dufresne authored 5 years ago
  
  e7f0a973
Aug 14, 2019
- refactor to put everything in graph attributes instead of name · ebf850ac
  Yoann Dufresne authored 5 years ago
  
  ebf850ac
Aug 13, 2019
- fix bugs induced by the d2g heritage simplification in all the mains · db2ebce9
  Yoann Dufresne authored 5 years ago
  
  db2ebce9
- refactor mains and subgraph definition to be coherent with nx graph heritage · ba61e7d2
  Yoann Dufresne authored 5 years ago
  
  ba61e7d2
- transform d2g to heritate from networkx Graph instead of beeing composed of · 3474f04e
  Yoann Dufresne authored 5 years ago
  
  3474f04e
Aug 09, 2019
- simple transitive reduction done · c0020617
  Yoann Dufresne authored 5 years ago
  
  c0020617
Aug 08, 2019
- d2 reloaded completed and tested · 4c84978d
  Yoann Dufresne authored 5 years ago
  
  4c84978d
- reload d2 nx graph and start reconstruct dg graphs + tests · d7e6c8cf
  Yoann Dufresne authored 5 years ago
  
  d7e6c8cf
Aug 07, 2019
- prepare d2 graph to realoding by moving construction steps to annexe functions · d5486b14
  Yoann Dufresne authored 5 years ago
  
  d5486b14
- bugfix: remove all the occurences of dominated d-graphs insted of only one · aa4f017b
  Yoann Dufresne authored 5 years ago
  
  aa4f017b
Jul 29, 2019
- evaluate longest path ok · 17971a94
  Yoann Dufresne authored 5 years ago
  
  17971a94
Jul 25, 2019
- Test and support previously writed code · 76239d13
  Yoann Dufresne authored 5 years ago
  
  76239d13
Jul 16, 2019
- Change the method to generate all the possible d-graph and the way to filter them · 31633d6a
  Yoann Dufresne authored 5 years ago
  
  31633d6a
Jul 08, 2019
- fix test issues · 309388be
  Yoann Dufresne authored 5 years ago
  
  309388be
Jun 11, 2019
- save d2_graph · cf3ae74c
  Yoann Dufresne authored 6 years ago
  
  cf3ae74c
May 22, 2019
- compute greedy simplification of d2 graph · 383385f7
  Yoann Dufresne authored 6 years ago
  
  383385f7
Apr 26, 2019
- d2 graph is working \o/ · fcdd78b1
  Yoann Dufresne authored 6 years ago
  
  fcdd78b1
Apr 24, 2019
- d2-graph reconstruction by d-1 overlapps · 897907a2
  Yoann Dufresne authored 6 years ago
  
  897907a2
- add tests and correct the values from them · d27838a2
  Yoann Dufresne authored 6 years ago
  
  d27838a2
Apr 23, 2019
- add subdirectories · f5430a9b
  Yoann Dufresne authored 6 years ago
  
  f5430a9b