Commits · dev · Yoann DUFRESNE / linked reads molecule ordering

Jan 24, 2020
- merge · 268fcbf6
  rchikhi authored 5 years ago
  
  268fcbf6
Jan 09, 2020
- refactor directories · 5e05d845
  Yoann Dufresne authored 5 years ago
  
  5e05d845
Jan 06, 2020
- simplify d2 snakemake interface and remove parasit prints · aba36815
  Yoann Dufresne authored 5 years ago
  
  aba36815
Jan 03, 2020
- some of my tests on alternative d_graphs construction techniques · b906f1b9
  rchikhi authored 5 years ago
  
  b906f1b9
Dec 30, 2019
- deconvolution updates · 288449cc
  Yoann Dufresne authored 5 years ago
  
  288449cc
Dec 11, 2019
- some debug info to d2 graph construction · be448d6c
  rchikhi authored 5 years ago
  
  be448d6c
Nov 27, 2019
- remove execuption variability · 47b4117e
  Yoann Dufresne authored 5 years ago
  
  47b4117e
Nov 04, 2019
- bugfix: unpredictable filter counts · 6802438f
  Yoann Dufresne authored 5 years ago
  
  6802438f
Sep 09, 2019
- opti: divide the d2 computation time by several order of magnitude · 9a61b76f
  Yoann Dufresne authored 5 years ago
  
  9a61b76f
Sep 06, 2019
- create a molecule proxy in the path creation · a7343c1f
  Yoann Dufresne authored 5 years ago
  
  a7343c1f
Aug 21, 2019
- scored unitig extraction ok · 1bc64e01
  Yoann Dufresne authored 5 years ago
  
  1bc64e01
Aug 20, 2019
- unitigs generation ok · e7f0a973
  Yoann Dufresne authored 5 years ago
  
  e7f0a973
Aug 14, 2019
- refactor to put everything in graph attributes instead of name · ebf850ac
  Yoann Dufresne authored 5 years ago
  
  ebf850ac
Aug 09, 2019
- simple transitive reduction done · c0020617
  Yoann Dufresne authored 5 years ago
  
  c0020617
Aug 08, 2019
- d2 reloaded completed and tested · 4c84978d
  Yoann Dufresne authored 5 years ago
  
  4c84978d
- reload d2 nx graph and start reconstruct dg graphs + tests · d7e6c8cf
  Yoann Dufresne authored 5 years ago
  
  d7e6c8cf
Jul 29, 2019
- evaluate longest path ok · 17971a94
  Yoann Dufresne authored 5 years ago
  
  17971a94
Jul 25, 2019
- Test and support previously writed code · 76239d13
  Yoann Dufresne authored 5 years ago
  
  76239d13
Jul 16, 2019
- Change the method to generate all the possible d-graph and the way to filter them · 31633d6a
  Yoann Dufresne authored 5 years ago
  
  31633d6a
Jul 08, 2019
- fix test issues · 309388be
  Yoann Dufresne authored 5 years ago
  
  309388be
Jun 11, 2019
- save d2_graph · cf3ae74c
  Yoann Dufresne authored 6 years ago
  
  cf3ae74c
May 23, 2019
- unitig extraction from graph · c22be631
  Yoann Dufresne authored 6 years ago
  
  c22be631
May 22, 2019
- compute greedy simplification of d2 graph · 383385f7
  Yoann Dufresne authored 6 years ago
  
  383385f7
Apr 26, 2019
- d2 graph is working \o/ · fcdd78b1
  Yoann Dufresne authored 6 years ago
  
  fcdd78b1
Apr 24, 2019
- d2-graph reconstruction by d-1 overlapps · 897907a2
  Yoann Dufresne authored 6 years ago
  
  897907a2
- add tests and correct the values from them · d27838a2
  Yoann Dufresne authored 6 years ago
  
  d27838a2
Apr 23, 2019
- add subdirectories · f5430a9b
  Yoann Dufresne authored 6 years ago
  
  f5430a9b
Apr 03, 2019
- generating and ordering d_graphs · cc574d80
  Yoann Dufresne authored 6 years ago
  
  cc574d80