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Biodiversity and Epidemiology of Bacterial Pathogens
diphtOscan
Commits
3ef51cab
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3ef51cab
authored
1 year ago
by
mrethore
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Update amrfinder required version
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3ef51cab
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@@ -17,9 +17,9 @@ _diphtOscan_ is a tool to search genomic assemblies of _Corynebacterium diphther
**A.**
Install the following programs and tools, or verify that they are already installed with the required version:
*
[
python
](
https://www.python.org/
)
version >= 3.8.3
*
[
mash
](
http://mash.readthedocs.io/en/latest/
)
version >= 2.3
;
*
[
mash
](
http://mash.readthedocs.io/en/latest/
)
version >= 2.3
*
[
blast+
](
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download
)
version >= 2.13.0
*
[
amrfinder
](
https://github.com/ncbi/amr/wiki
)
version >= 3.1
1.2
*
[
amrfinder
](
https://github.com/ncbi/amr/wiki
)
version >= 3.1
2.8
*
[
hmmer
](
http://hmmer.org/
)
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