Removing old database

681abd50 · mrethore · 9967ce15 · 9967ce15 · 9967ce15 · 9967ce15
Commit 681abd50 authored 1 year ago by mrethore
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.ndb
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.ndb
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nhr
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nhr
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nin
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nin
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.not
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.not
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nsq
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nsq
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.ntf
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.ntf
--- a/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nto
+++ b/data/mlst/pubmlst_diphtheria_seqdef_scheme_3.fas.nto
--- a/data/resistance/2023-10-12/AMR.LIB.h3i
+++ b/data/resistance/2023-10-12/AMR.LIB.h3i
--- a/data/resistance/2023-10-12/AMRProt.phr
+++ b/data/resistance/2023-10-12/AMRProt.phr
--- a/data/resistance/2023-10-12/AMRProt.pin
+++ b/data/resistance/2023-10-12/AMRProt.pin
--- a/data/resistance/2023-10-12/AMR_CDS.nhr
+++ b/data/resistance/2023-10-12/AMR_CDS.nhr
--- a/data/resistance/2023-10-12/AMR_CDS.nin
+++ b/data/resistance/2023-10-12/AMR_CDS.nin
--- a/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.nhr
+++ b/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.nhr
--- a/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.nin
+++ b/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.nin
--- a/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.tab
+++ b/data/resistance/2023-10-12/AMR_DNA-Acinetobacter_baumannii.tab
-#accesion_version@gene_name@gene_symbol:start-stop	mutation_position	mutation_symbol	class	subclass	mutated_gene_name
-NZ_CP049806.1@blaOXA-143_family_promoter_region@blaOXA:3403170-3403400	15	blaOXA_G-42A	BETA-LACTAM	CARBAPENEM	Acinetobacter_baumannii_carbapenem_resistant_blaOXA
-NZ_CP049806.1@blaOXA-143_family_promoter_region@blaOXA:3403170-3403400	43	blaOXA_A-14G	BETA-LACTAM	CARBAPENEM	Acinetobacter_baumannii_carbapenem_resistant_blaOXA
--- a/data/resistance/2023-10-12/AMR_DNA-Campylobacter.nin
+++ b/data/resistance/2023-10-12/AMR_DNA-Campylobacter.nin
--- a/data/resistance/2023-10-12/AMR_DNA-Campylobacter.not
+++ b/data/resistance/2023-10-12/AMR_DNA-Campylobacter.not
--- a/data/resistance/2023-10-12/AMR_DNA-Campylobacter.nto
+++ b/data/resistance/2023-10-12/AMR_DNA-Campylobacter.nto
--- a/data/resistance/2023-10-12/AMR_DNA-Clostridioides_difficile.nin
+++ b/data/resistance/2023-10-12/AMR_DNA-Clostridioides_difficile.nin
--- a/data/resistance/2023-10-12/AMR_DNA-Enterococcus_faecalis.nin
+++ b/data/resistance/2023-10-12/AMR_DNA-Enterococcus_faecalis.nin