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diphtOscan
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Biodiversity and Epidemiology of Bacterial Pathogens
diphtOscan
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9220c2aee9a732388038b307aacfa5756711b60c
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main
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1.7.0
1.6.1
1.6.0
1.5.0
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Created with Raphaël 2.2.0
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Update README.md
1.7.0 main
1.7.0 main
Merge branch 'Integron_finder_updated_version_2.0.5' into 'main'
Add a CHANGELOG.md file to track updates
Update version to 1.7.0
Fix number of lines to skip when reading Integron_finder output file
Merge branch 'Completion_of_missing_AMR_classifications' into 'main'
1.6.1
1.6.1
Changing Version & removing deprecated email contact
Minor update
Minor update
Splitting update_database to allow update of missing Class & Subclass in fam.tab
Dependency test modification
pandas chained assignment update
Merge branch 'Corynebacterium_resistance_database_update' into 'main'
1.6.0
1.6.0
Update_version
Removing tox_diphtheriae from fam.tab
Removing duplicated prot sequence
Removing DIP0543 (nanH in AMRdb)
Referencing genes with family deleted in 'VIRULENCE_Corynebacterium'
Keeping 'VIRULENCE_Corynebacterium' Family
Removing deprecated family
removing fam.tab duplicate
removed duplicated mutation
Update date
Merge branch 'Format_db_for_armfinder_3.12' into 'main'
1.5.0
1.5.0
Delete database with duplicated "*"
Adding last database (04-03)
removal of duplicates *
Update_version_number
Removing old database
Updating database
Reformat_AMRPort_Cd
Change diphtoscan version (Update amrfinder required version)
Update amrfinder required version
Minor changes
Merge branch 'armfinder_nomenclature_update' into 'main'
Change armfinder_to_tables
Merge branch 'absolute_paths' into 'main'
Adding options to make HTTPS protocol works
Change of web address for downloading the resistance database
Replace fasta variable by genome