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Commit bd80ebce authored by Mélanie HENNART's avatar Mélanie HENNART
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Update README.md

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...@@ -28,7 +28,7 @@ Launch _InheritanceAlgorithm_ with option `-h` to read the following documentati ...@@ -28,7 +28,7 @@ Launch _InheritanceAlgorithm_ with option `-h` to read the following documentati
``` ```
usage: InheritanceAlgorithm [-h] -i FILEINPUT -c COLUMN_CG -o FILEOUTPUT usage: InheritanceAlgorithm [-h] -i FILEINPUT -c COLUMN_CG -o FILEOUTPUT
This tool converts Genbank files into EMBL-like files for submission to ENA This tool to attribute to each clonal group (CG), an identifier that would maximally reflect the widely adopted 7-gene ST identifier of the corresponding isolates.
optional arguments: optional arguments:
-h, --help show this help message and exit -h, --help show this help message and exit
...@@ -50,4 +50,7 @@ python gbk2ENA.py -i clustering.strain.txt -c Seuil43,Seuil190 -o result.txt ...@@ -50,4 +50,7 @@ python gbk2ENA.py -i clustering.strain.txt -c Seuil43,Seuil190 -o result.txt
## References ## References
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains
Melanie Hennart, Julien Guglielmini, Martin C.J. Maiden, Keith A. Jolley, Alexis Criscuolo, Sylvain Brisse
bioRxiv 2021.07.26.453808; doi: https://doi.org/10.1101/2021.07.26.453808
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