Lm.2HF33.stepI.log

# OS:   linux-gnu
# Bash: 4.4.20(1)-release
# fqCleanER: 25.03
# input file(s):
> PE lib 1
+ FQ11: [111.9 Mb]	ERR4032786_1.fastq.gz
+ FQ12: [127.8 Mb]	ERR4032786_2.fastq.gz
# output directory
+ OUTDIR=/tmp/fq2dna.Lm.2HF33.Iqb7XNY1Q
# tmp directory
+ TMP_DIR=/tmp/fq2dna.Lm.2HF33.Iqb7XNY1Q/fqCleanER.stepI.JQadkTYoq
[00:01] reading input files ... [ok]
> PE lib 1
+ FQ11: 762547 reads	177725542 bases	(avg lgt = 233 bps)
+ FQ12: 762547 reads	178811314 bases	(avg lgt = 234 bps)
[00:06] estimating read length threshold (option -l) ... [ok]
+ L=116
# alien oligonucleotides
+ ALIENS=NEXTERA
# contaminating sequence model
+ CONTAFILE=phiX.fasta
[00:06] processing files ...
+ STEPS="DTCNE"
+ NTHREADS=12
[00:06] [D]eduplicating ... [ok]
> PE lib 1
+ FQ11: 762335 reads	177683719 bases	(avg lgt = 233 bps)
+ FQ12: 762335 reads	178769485 bases	(avg lgt = 235 bps)
[00:12] [T]rimming and clipping ... [ok]
> PE lib 1
+ FQ11: 724918 reads	170939938 bases	(avg lgt = 236 bps)
+ FQ12: 724918 reads	168009242 bases	(avg lgt = 232 bps)
+ FQ1S: 10520 reads	2488567 bases	(avg lgt = 237 bps)
[00:24] discarding [C]ontaminating reads ... [ok]
> PE lib 1
+ FQ11: 724102 reads	170701435 bases	(avg lgt = 236 bps)
+ FQ12: 724102 reads	167786906 bases	(avg lgt = 232 bps)
+ FQ1S: 10491 reads	2481149 bases	(avg lgt = 237 bps)
[00:48] [N]ormalizing coverage depth ... [ok]
> PE lib 1
+ FQ11: 717642 reads	169344902 bases	(avg lgt = 236 bps)
+ FQ12: 717642 reads	166522419 bases	(avg lgt = 232 bps)
+ FQ1S: 9580 reads	2269372 bases	(avg lgt = 237 bps)
[01:53] correcting sequencing [E]rrors ... [ok]
[02:59] finalizing ... [ok]
# output files:
+ R1:  [340.0 Mb]	/tmp/fq2dna.Lm.2HF33.Iqb7XNY1Q/stepI.1.fastq
+ R2:  [334.6 Mb]	/tmp/fq2dna.Lm.2HF33.Iqb7XNY1Q/stepI.2.fastq
+ Sgl: [4.5 Mb]	/tmp/fq2dna.Lm.2HF33.Iqb7XNY1Q/stepI.S.fastq
[03:00] exit