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  • 24.02
    8b71c9bd · 24.02 ·
    VERSION=24.02
    + improved check dependencies using option -d
    + use the more efficient unimodality (momo) index instead of the bimodality coefficient
  • 23.12
    ac388dab · 23.12 ·
    VERSION=23.12
    + new option -d to check dependencies
    + modified default Phred score cutoff, i.e. -q 20
    + modified default MINCOV and MAXCOV values, i.e. (3,60) instead of (3,61)
    + modified estimate of the genome length, using NTCARD with k=25
    + only 1 thread for step M: slower but reproductible (FLASH output depends on the no. threads)
    + now requires SAMTOOLS v1.18
    + improved assembly polishing step for strategies A, B, P, S and V (option -s)
    + only undefined (N) position with enough coverage are written into output file .scf.amb.txt
  • 23.07
    8f692176 · 23.07 ·
    VERSION=23.07
    + fixed bug with option -w
    + based on FQCLEANER v23.07
    + MINIMAP2 replaced with BWA-MEM2
    + less conservative genome size approximation, i.e. gsize=F0-f1-f2
    + modified default MINCOV and MAXCOV values, i.e. (3,61) instead of (2,60)
    + modified k-mer size selection for SPADES
    + fast assembly polishing step based on SAMTOOLS for strategies A, B, P, S and V (option -s)
    + new output file .scf.amb.txt
  • 21.06
    278bf1d5 · 21.06 ·