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VERSION=23.12
+ new option -d to check dependencies
+ modified default Phred score cutoff, i.e. -q 20
+ modified default MINCOV and MAXCOV values, i.e. (3,60) instead of (3,61)
+ modified estimate of the genome length, using NTCARD with k=25
+ only 1 thread for step M: slower but reproductible (FLASH output depends on the no. threads)
+ now requires SAMTOOLS v1.18
+ improved assembly polishing step for strategies A, B, P, S and V (option -s)
+ only undefined (N) position with enough coverage are written into output file .scf.amb.txt