Commit 6282ecd2 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

install last version of blastp

parent c1cbeb57
Pipeline #23310 failed with stage
in 9 minutes and 5 seconds
......@@ -15,10 +15,10 @@ RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\
rm ncbi-blast-2.9.0+-x64-linux.tar.gz
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
rm ncbi-blast-2.10.0+-x64-linux.tar.gz
# Install mash
......@@ -42,6 +42,7 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
# Install prokka:
WORKDIR /tmp
RUN echo blastp --version
RUN apt-get install -y\
libdatetime-perl \
libxml-simple-perl \
......
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