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Amandine PERRIN
pipeline_annotation
Commits
6282ecd2
Commit
6282ecd2
authored
Jan 30, 2020
by
Amandine PERRIN
Browse files
install last version of blastp
parent
c1cbeb57
Pipeline
#23310
failed with stage
in 9 minutes and 5 seconds
Changes
1
Pipelines
1
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Inline
Side-by-side
for_tests/Dockerfile
View file @
6282ecd2
...
...
@@ -15,10 +15,10 @@ RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
WORKDIR
/tmp
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.
9
.0+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.
9
.0+-x64-linux.tar.gz
&&
\
cp
/tmp/ncbi-blast-2.
9
.0+/bin/makeblastdb /usr/local/bin/
&&
\
rm
ncbi-blast-2.
9
.0+-x64-linux.tar.gz
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.
10
.0+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.
10
.0+-x64-linux.tar.gz
&&
\
cp
/tmp/ncbi-blast-2.
10
.0+/bin/makeblastdb /usr/local/bin/
&&
\
rm
ncbi-blast-2.
10
.0+-x64-linux.tar.gz
# Install mash
...
...
@@ -42,6 +42,7 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
# Install prokka:
WORKDIR
/tmp
RUN
echo
blastp
--version
RUN
apt-get
install
-y
\
libdatetime-perl
\
libxml-simple-perl
\
...
...
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