Skip to content
Snippets Groups Projects
Commit 8986fa0a authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

remove mafft install from bioperl

parent ba440569
No related branches found
No related tags found
No related merge requests found
Pipeline #
...@@ -25,9 +25,11 @@ RUN git clone https://github.com/tseemann/prokka.git ...@@ -25,9 +25,11 @@ RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
# Install quicktree # Install quicktree
WORKDIR /tmp WORKDIR /tmp
RUN git clone https://github.com/tseemann/quicktree RUN git clone https://github.com/tseemann/quicktree
WORKDIR quicktree WORKDIR quicktree
RUN make &&\ RUN make &&\
ln -s /tmp/quicktree/quicktree /usr/local/bin ln -s /tmp/quicktree/quicktree /usr/local/bin
\ No newline at end of file
...@@ -24,3 +24,5 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ ...@@ -24,3 +24,5 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\ tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
...@@ -17,3 +17,5 @@ RUN apt-get install -y \ ...@@ -17,3 +17,5 @@ RUN apt-get install -y \
# Update pip # Update pip
RUN pip3 install --upgrade pip RUN pip3 install --upgrade pip
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
...@@ -24,3 +24,5 @@ RUN apt-get install -y\ ...@@ -24,3 +24,5 @@ RUN apt-get install -y\
RUN git clone https://github.com/tseemann/prokka.git RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment