Commit 8986fa0a authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

remove mafft install from bioperl

parent ba440569
Pipeline #3599 passed with stage
in 31 minutes and 11 seconds
......@@ -25,9 +25,11 @@ RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
# Install quicktree
WORKDIR /tmp
RUN git clone https://github.com/tseemann/quicktree
WORKDIR quicktree
RUN make &&\
ln -s /tmp/quicktree/quicktree /usr/local/bin
\ No newline at end of file
ln -s /tmp/quicktree/quicktree /usr/local/bin
......@@ -24,3 +24,5 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
......@@ -17,3 +17,5 @@ RUN apt-get install -y \
# Update pip
RUN pip3 install --upgrade pip
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
......@@ -24,3 +24,5 @@ RUN apt-get install -y\
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
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