Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Amandine PERRIN
pipeline_annotation
Commits
8b120383
Commit
8b120383
authored
Oct 07, 2019
by
Amandine PERRIN
Browse files
Test building image for tests + for annotate-tree
parent
37456c10
Pipeline
#15889
failed with stage
in 8 minutes and 8 seconds
Changes
3
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
.gitlab-ci.yml
View file @
8b120383
...
...
@@ -34,17 +34,17 @@ build-test-image:
# tags:
# - k8s
#
build-install-annote-and-quicktree:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update #; apk add git
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
#
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
#
tags:
#
- k8s
build-install-annote-and-quicktree
:
only
:
-
docker
stage
:
build
script
:
-
apk update
#; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
-
docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
tags
:
-
k8s
# build-ubuntu:
# only:
...
...
for_build/annote_and_1tree/Dockerfile
View file @
8b120383
...
...
@@ -16,6 +16,14 @@ RUN apt-get install -y \
RUN
pip3
install
--upgrade
pip
# Update makeblastdb for prokka
WORKDIR
/tmp
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz
&&
\
cp
/tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/
&&
\
rm
ncbi-blast-2.9.0+-x64-linux.tar.gz
# Install prokka:
WORKDIR
/tmp
RUN
apt-get
install
-y
\
...
...
for_tests/Dockerfile
View file @
8b120383
...
...
@@ -13,7 +13,7 @@ RUN apt-get install -y \
RUN
pip3
install
--upgrade
pip
# Update makeblastdb
# Update makeblastdb
for prokka
WORKDIR
/tmp
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz
&&
\
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment