Commit 8b120383 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Test building image for tests + for annotate-tree

parent 37456c10
Pipeline #15889 failed with stage
in 8 minutes and 8 seconds
......@@ -34,17 +34,17 @@ build-test-image:
# tags:
# - k8s
# build-install-annote-and-quicktree:
# only:
# - docker
# stage: build
# script:
# - apk update #; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
# - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
# tags:
# - k8s
build-install-annote-and-quicktree:
only:
- docker
stage: build
script:
- apk update #; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
tags:
- k8s
# build-ubuntu:
# only:
......
......@@ -16,6 +16,14 @@ RUN apt-get install -y \
RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\
rm ncbi-blast-2.9.0+-x64-linux.tar.gz
# Install prokka:
WORKDIR /tmp
RUN apt-get install -y\
......
......@@ -13,7 +13,7 @@ RUN apt-get install -y \
RUN pip3 install --upgrade pip
# Update makeblastdb
# Update makeblastdb for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
......
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