Test building image for tests + for annotate-tree

.gitlab-ci.yml

@@ -34,17 +34,17 @@ build-test-image:
 #   tags:
 #     - k8s
 
-# build-install-annote-and-quicktree:
-#   only:
-#     - docker
-#   stage: build
-#   script:
-#     - apk update #; apk add git
-#     # - git checkout master -- requirements.txt
-#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
-#     - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
-#   tags:
-#     - k8s
+build-install-annote-and-quicktree:
+  only:
+    - docker
+  stage: build
+  script:
+    - apk update #; apk add git
+    # - git checkout master -- requirements.txt
+    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
+    - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
+  tags:
+    - k8s
 
 # build-ubuntu:
 #   only:

for_build/annote_and_1tree/Dockerfile

@@ -16,6 +16,14 @@ RUN apt-get install -y \
 RUN pip3 install --upgrade pip
 
 
+# Update makeblastdb for prokka
+WORKDIR /tmp
+RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
+    tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
+    cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\
+    rm ncbi-blast-2.9.0+-x64-linux.tar.gz
+
+
 # Install prokka:
 WORKDIR /tmp
 RUN apt-get install -y\

for_tests/Dockerfile

@@ -13,7 +13,7 @@ RUN apt-get install -y \
 RUN pip3 install --upgrade pip
 
 
-# Update makeblastdb
+# Update makeblastdb for prokka
 WORKDIR /tmp
 RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
     tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\