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Commit c1cbeb57 authored by Amandine PERRIN's avatar Amandine PERRIN
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try to update blastp for prokka

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Pipeline #23309 failed
Stage: build
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.gitlab-ci.yml
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...@@ -19,6 +19,7 @@ build-test-image: ...@@ -19,6 +19,7 @@ build-test-image:
# - git checkout master -- requirements.txt # - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
- docker push "$CI_REGISTRY_IMAGE/testing-ubuntu" - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
- blastp --version
tags: tags:
- k8s - k8s
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for_tests/Dockerfile
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...@@ -81,7 +81,7 @@ WORKDIR /tmp ...@@ -81,7 +81,7 @@ WORKDIR /tmp
RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\ RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\ gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\
ln -s /tmp/FastTreeMP /usr/local/bin ln -s /tmp/FastTreeMP /usr/local/bin
## Install FastME FastME 2.1.6.1 ## Install FastME FastME 2.1.6.1
WORKDIR /tmp WORKDIR /tmp
RUN apt-get install -y automake &&\ RUN apt-get install -y automake &&\
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